prickly gecko, Reference Genome, PacBio-HiFi, tail tip
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:ausarg-consortium-members |
| Access Control Date | 2024-03-28 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| access_rights | No restrictions |
| ala_specimen_url | unknown |
| analysis_software | SMRT Link Analysis |
| analysis_software_version | 11.1.0.166339 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | unknown |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/ausarg_staging/pacbio-hifi/BPAOPS-1372/20230322_AusARG_AGRF_CAGRF220912067/ |
| cell_postion | 4_D01 |
| certainty | high |
| class | Lepidosauria |
| collection_date | 2022-05-26 |
| collection_method | hand |
| collector | Kate O'Hara | Stephen Zozaya | Craig Moritz |
| collector_sample_id | CCM8104 |
| common_name | prickly gecko |
| coord_uncertainty_metres | 100.0 |
| country | Austalia |
| data_context | Reference Genome |
| data_custodian | Kate O'Hara |
| data_type | PacBio-HiFi |
| dataset_id | 102.100.100/351852 |
| date_of_transfer | 2023-03-29 |
| date_of_transfer_to_archive | 2023-03-31 |
| death_date | 2022-06-10 |
| decimal_latitude_public | -26.3831 |
| decimal_longitude_public | 113.3127 |
| description | HiFi |
| dna_treatment | SHEARING |
| experimental_design | NA |
| facility_project_code | CAGRF220912067 |
| facility_sample_id | 414129.0 |
| family | Gekkonidae |
| fast5_compression | NA |
| file_type | BAM |
| flowcell_id | DA235337 |
| flowcell_type | SMRT Cell 8M |
| folder_name | 20230322_AusARG_AGRF_CAGRF220912067 |
| genotypic_sex | female |
| genus | Heteronotia |
| habitat | unknown |
| identified_by | Craig Moritz |
| insert_size_range | 13777.0 |
| institution_name | The Australian National University |
| library_comments | Library sequenced |
| library_construction_protocol | Preparing whole genome and metagenome libraries using SMRTbell ® prep kit 3.0 |
| library_id | 102.100.100/414129 |
| library_index_id | NA |
| library_index_id_dual | NA |
| library_index_seq_dual | NA |
| library_index_sequence | NA |
| library_layout | NA |
| library_location | AGRF |
| library_ng_ul | 43.5 |
| library_oligo_sequence | NA |
| library_oligo_sequence_dual | NA |
| library_prep_date | 2023-02-28 |
| library_prepared_by | Jack Royle |
| library_selection | size fractionation |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_text | False Entrance Well |
| material_conc_ng_ul | 96.0 |
| material_extracted_by | Kate O'Hara |
| material_extraction_date | 2022-09-15 |
| material_extraction_method | Circulomics kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2023-03-14 |
| metadata_revision_filename | AusARG_Metadata_master_QCIF_20230314.xlsx |
| method_of_determination | observation |
| model_base_caller | NA |
| movie_length | 30HRS |
| n_libraries_pooled | 1 |
| order | Squamata |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | unknown |
| sample_custodian | NA |
| sample_id | 102.100.100/411655 |
| sample_quality | very high |
| sequencing_facility | AGRF |
| sequencing_kit_chemistry_version | 11.1.0.154383 |
| sequencing_model | PacBio Sequel II |
| sequencing_platform | PACBIO_SMRT |
| source_population | NA |
| species | binoei |
| specimen_id | NA |
| specimen_id_description | NA |
| state_or_region | Western Australia |
| subspecies | NA |
| taxon_id | 13085 |
| taxonomic_group | lizard |
| ticket | BPAOPS-1372 |
| tissue_collection | NA |
| tissue_number | CCM8104 |
| tissue_preservation | frozen |
| tissue_type | tail tip |
| type_status | not a type specimen |
| voucher_or_tissue_number | CCM8104 |
| wild_captive | wild |
| work_order | 13052 |