Brolga, Reference genome, PacBio-HiFi, blood
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until December 24, 2025 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Additional Info Show Blank Fields
Field | Value |
---|---|
Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
Resource Permissions | organization_member |
Access Control Date | 2025-12-24 |
Access Control Mode | date |
Sequence Data Type | pacbio-hifi |
altitude | NA |
analysis_software | SMRT Link Analysis 13.0.0.207600 |
ancillary_notes | NA |
associated_media | NA |
bait_set_name | NA |
bait_set_reference | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/avian_staging/pacbio-hifi/BPAOPS-1735/20241223_AVIAN_AGRF_CAGRF24080145_m84073_241220_104627_s4/ |
bioplatforms_dataset_id | 102.100.100/613513 |
bioplatforms_library_id | 102.100.100/611513 |
bioplatforms_project | Australian Avian Genomics Initiative (AVIAN) |
bioplatforms_sample_id | 102.100.100/609513 |
cell_postion | D01 |
class | Aves |
collection_date | 2024-03-21 |
collection_method | Australian noose trap with call playback and taxidermy decoy (description in Veltheim et al. 2015 https://doi.org/10.1071/WR14238) |
collection_permit | Research under Wildlife Act permit 10010774, with ethics approval from Victorian Department of Energy, Environment and Climate Action Animal Ethics Committee under application 23-001. |
collector | Danny Rogers, Nyil Kwaja, Inka Veltheim, Neville Amos, Arthur Rylah Institute |
collector_sample_id | 350-03392 |
common_name | Brolga |
country | Australia |
data_context | Reference genome |
data_type | PacBio-HiFi |
date_of_transfer | 2024-12-24 |
date_of_transfer_to_archive | 2025-01-06 |
decimal_latitude_public | -36.5162 |
decimal_longitude_public | 144.842 |
dna_treatment | SHEARING |
env_broad_scale | cropland biome [ENVO_01000245] |
env_local_scale | freshwater biome [ENVO_00000873] |
env_medium | NA |
experimental_design | PacBio HiFi, long reads |
facility_project_code | CAGRF24080145 |
facility_sample_id | 611513.0 |
family | Gruidae |
fast5_compression | NA |
flowcell_id | m84073_241220_104627_s4 |
flowcell_type | SMRT Cell 25M |
folder_name | 20241223_AVIAN_AGRF_CAGRF24080145_m84073_241220_104627_s4 |
genotypic_sex | NA |
genus | Antigone |
habitat | cropland biome [ENVO_01000245] |
health_state | unknown |
identified_by | Danny Rogers, Nyil Kwaja, Inka Veltheim, Neville Amos, Arthur Rylah Institute |
indigenous_location | Taungurung |
insert_size_range | 17000.0 |
latitude | -36.5162 |
library_comments | NA |
library_construction_protocol | Preparing HiFi SMRTbell Libraries using SMRTbell Express Template Prep Kit 3.0 |
library_index_id | NA |
library_index_id_dual | NA |
library_index_seq_dual | NA |
library_index_sequence | NA |
library_layout | NA |
library_location | AGRF |
library_ng_ul | 285pM |
library_oligo_sequence | NA |
library_oligo_sequence_dual | NA |
library_pcr_cycles | NA |
library_pcr_reps | NA |
library_prepared_by | Trent Peters |
library_selection | size fractionation |
library_source | GENOMIC |
library_strategy | WGS |
library_type | PacBio-HiFi |
lifestage | adult |
location_info_restricted | No |
location_text | Private property, Burramboot, Between Gaynor Swamp and Lake Stewart |
longitude | 144.842 |
material_conc_ng_ul | 412.64 |
material_extracted_by | Lauren White |
material_extraction_date | 2024-10-08 |
material_extraction_method | PacBio NanoBind HMW PanDNA kit |
material_extraction_type | DNA |
metadata_revision_date | 2025-01-06 |
metadata_revision_filename | 20250106_AVIAN_Sample_metadata_COMBINED-FOR-PORTAL_NOPRIVLATLON.xlsx |
method_sex_determination | observation, behaviour |
model_base_caller | NA |
movie_length | 30Hrs |
n_libraries_pooled | 1.0 |
order | Gruiformes |
phenotypic_sex | female |
phylum | Chordata |
project_lead | Lauren White, Arthur Rylah Institute |
sample_collection_type | other (Research Institute - government) |
sample_custodian | Lauren White, Arthur Rylah Institute |
sample_id | 350-03392 |
sample_id_description | Arthur Rylah Institute |
sample_quality | NA |
sample_type | tissue |
scientific_name | Antigone rubicunda |
scientific_name_authorship | NA |
scientific_name_note | NA |
sequencing_facility | AGRF |
sequencing_kit_chemistry_version | Revio sequencing plate |
sequencing_model | PacBio Revio |
sequencing_platform | PACBIO_SMRT |
sex_certainty | unsure |
source_population | North-Victoria |
species | rubicunda |
specimen_custodian | Lauren White, Arthur Rylah Institute |
specimen_id | 350-03392 |
specimen_id_description | Arthur Rylah Institute |
state_or_region | Victoria |
sub_species | NA |
taxon_id | 2717061.0 |
taxonomic_group | bird |
temperature | NA |
ticket | BPAOPS-1735 |
tissue | blood |
tissue_preservation | frozen |
tissue_preservation_temperature | -20.0 |
type_status | NA |
wild_captive | wild |
work_order | 26001 |