BASE Amplicons 16S 12831_1 A801W
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Data and Resources
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12831_1_16S_AGRF_CTTGTGTCGATA_A8... Metadata Only FASTQ
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BASE_16S_AGRF_A5K1H_checksums.md5 Metadata Only MD5
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12831_1_16S_AGRF_CTTGTGTCGATA_A8... Metadata Only FASTQ
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BASE_16S_AGRF_A801W_checksums.md5 Metadata Only MD5
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12831_1_16S_AGRF_CTTGTGTCGATA_A8... Metadata Only FASTQ
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BASE_16S_AGRF_A8190_checksums.md5 Metadata Only MD5
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2015-04-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| Related Data | doi:10.25953/4rpw-zc23 |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 7.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | 16S |
| analysis_software_version | 2.3.0.3 |
| archive_ingestion_date | 2015-01-01 |
| base_amplicon_linkage | A801W |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/16s/agrf/BRLOPS-273/20140310_AGRF_BASE_A801W/ |
| bioplatforms_dataset_id | 102.100.100/401918 |
| bioplatforms_project | Biome of Australia Soil Environments (BASE) |
| bioplatforms_project_code | BASE_TERN |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 0.46 |
| boron_hot_cacl2_meth | meth_2.1 |
| clay (%) | 34.63 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 46.02 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2013-10-29T00:00:00 |
| color | BROR |
| conductivity (dS/m) | 0.03 |
| conductivity_meth | meth_2.1 |
| data_generated | 2015-01-01 |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_id | 102.100.100/401918 |
| date_of_transfer | 2015-01-01 |
| depth (m) | 0.2 |
| depth_lower (m) | 0.3 |
| depth_upper (m) | 0.2 |
| dilution | 1:10 |
| dtpa_copper (mg/kg) | 0.79 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 47.81 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 8.79 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 18.85 |
| dtpa_zinc_meth | meth_2.1 |
| elev (m) | 1129.0 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1.3 National park |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.568 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 0.28 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 0.17 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.09 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.07 |
| exc_sodium_meth | meth_2.1 |
| facility | AGRF |
| facility_code | agrf |
| fine_sand (%) | 9.15 |
| fine_sand_meth | meth_2.1 |
| flow_cell_id | A801W |
| flow_id | A801W |
| general_env_feature | Tropical (wet) |
| geo_loc_name | Australia:Queensland [GAZ_00002792] |
| gravel (%) | 15.0 |
| gravel_meth | meth_2.1 |
| index | CTTGTGTCGATA |
| lat_lon (decimal_degrees) | -17.092083 145.620217 |
| latitude (decimal_degrees) | -17.092083 |
| local_class | Dermosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 145.620217 |
| ncbi_bioproject_accession | PRJNA317932 |
| ncbi_bioproject_accession_number | PRJNA317932 |
| ncbi_biosample_accession | SAMN04874271 |
| ncbi_biosample_accession_number | SAMN04874271 |
| nitrate_nitrogen (mg/kg) | 4.0 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| organic_carbon (%) | 2.08 |
| organic_carbon_meth | meth_2.1 |
| pcr_1_to_10 | P |
| ph | 4.7 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 5.3 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 2.0 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 34.0 |
| potassium_colwell_meth | meth_2.1 |
| read_length | 300bp |
| reads | 199008 |
| sample_database_file | AM_db_v4.2_202508201559.db |
| sample_extraction_id | 12831_1 |
| sample_id | 102.100.100/12831 |
| sample_metadata_ingest_date | 2021-04-23 11:13:48 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; Lat_lon_reduce_sig_fig_curation_round_6dec_UPDATE_xlsx; |
| sample_name | 12831_1_16s_AGRF_CTTGTGTCGATA |
| sample_site_location_description | Mt Edith |
| sample_submission_date | 2015-01-01 |
| sample_type | Soil |
| sand (%) | 55.18 |
| sand_meth | meth_2.1 |
| sequencing_facility | AGRF |
| silt (%) | 10.2 |
| silt_meth | meth_2.1 |
| slope_aspect (direction_or_degrees) | 220.0 |
| slope_gradient (%) | 10.0 |
| source_mat_id | 102.100.100/12831 |
| store_cond | frozen |
| sulphur (mg/kg) | 17.3 |
| sulphur_meth | meth_2.1 |
| target | 16S |
| texture | 1.5 |
| texture_meth | meth_2.1 |
| ticket | BRLOPS-273 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/12831 |
| utc_date_sampled | 2013-10-29 |
| vegetation_type | Forest |
| water_content (%) | 22.5 |
| water_content_soil_meth | meth_2.1 |