BASE Amplicons 16S 42293_1 BM3J6
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-05-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 1e-10 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | 16S |
| analysis_software_version | 2.6.2.3 |
| archive_ingestion_date | 2018-01-31 |
| base_amplicon_linkage | BM3J6 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/16s/ramaciotti/BPAOPS-502/ |
| bioplatforms_project | Biome of Australia Soil Environments (BASE) |
| biotic_relationship | Free-living |
| clay (%) | 0.96 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 96.55 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2017-08-23T00:00:00 |
| color | LTGR |
| comments | 42293_1_16S_UNSW_GACTCTTG_TCTACACT_BM3J6 |
| conductivity (dS/m) | 0.013 |
| conductivity_meth | meth_2.1 |
| data_generated | 2018-01-31 |
| data_type | MiSeq 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads.bioplatforms.com/bpa/base/raw/amplicons/16s/ramaciotti/BPAOPS-502/ |
| date_of_transfer | 2018-01-31 |
| depth (m) | 0.2 |
| depth_lower (m) | 0.3 |
| depth_upper (m) | 0.2 |
| description | BASE |
| dilution | 1:10 |
| dtpa_copper (mg/kg) | 0.1 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 5.9 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 0.52 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 0.07 |
| dtpa_zinc_meth | meth_2.1 |
| elev (m) | 50.0 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.2.1 Biodiversity |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.025 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 0.6 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 0.15 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.02 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.04 |
| exc_sodium_meth | meth_2.1 |
| facility | RAMACIOTTI |
| facility_code | ramaciotti |
| fine_sand (%) | 2.49 |
| fine_sand_meth | meth_2.1 |
| fire | No recent fire |
| flooding | No |
| flow_id | BM3J6 |
| folder_name | 20180131_UNSW_BPA_BASE_BM3J6 |
| general_env_feature | Temperate |
| geo_loc_name | Australia:Western Australia [GAZ_00002789] |
| gravel (%) | 0 |
| gravel_meth | meth_2.1 |
| horizon | B horizon |
| immediate_previous_land_use | 1.2.1 Biodiversity |
| lat_lon (decimal_degrees) | -32.54222 115.77916 |
| latitude (decimal_degrees) | -32.54222 |
| local_class | Tenosols |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 115.77916 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| nitrate_nitrogen (mg/kg) | 1e-10 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| organic_carbon (%) | 0.34 |
| organic_carbon_meth | meth_2.1 |
| pcr_1_to_10 | P |
| ph | 5.4 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 6.2 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 1e-10 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 1e-10 |
| potassium_colwell_meth | meth_2.1 |
| profile_position | toeslope |
| read_length | 300bp |
| reads | 73277 |
| sample_attribution | Bahram Mirfakhraei |
| sample_database_file | AM_db_v4.2_202508201559.db |
| sample_extraction_id | 42293_1 |
| sample_id | 102.100.100/42293 |
| sample_metadata_ingest_date | 2021-04-23 11:13:48 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; BASE_contextual_data_spreadsheet_2018_Bahram_Mirfakhraei_UPDATE_xlsx; Soil_control_vocab_update_env_med_biotic_rel_22062021_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; Soil_profile_horizon_NCBI_format_curate_UPDATE_xlsx; |
| sample_site_location_description | Lake Goegrup >20 cm |
| sample_submission_date | 2018-01-31 |
| sample_submitter | Bahram Mirfakhraei |
| sample_type | Soil |
| sand (%) | 99.04 |
| sand_meth | meth_2.1 |
| silt (%) | 1e-10 |
| silt_meth | meth_2.1 |
| slope_gradient (%) | 0.0 |
| source_mat_id | 102.100.100/42293 |
| sulphur (mg/kg) | 1.0 |
| sulphur_meth | meth_2.1 |
| target | 16S |
| texture | 1.0 |
| texture_meth | meth_2.1 |
| ticket | BPAOPS-502 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/42293 |
| utc_date_sampled | 2017-08-23 |
| vegetation_total_cover (%) | 90.0 |
| vegetation_type | Woodland |