BASE Amplicons 16S 42375_1 BM3J6
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-05-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Soil |
| amplicon | 16S |
| analysis_software_version | 2.6.2.3 |
| archive_ingestion_date | 2018-01-31 |
| base_amplicon_linkage | BM3J6 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/16s/ramaciotti/BPAOPS-502/ |
| bioplatforms_project | Biome of Australia Soil Environments (BASE) |
| biotic_relationship | Free-living |
| clay (%) | 49.0 |
| clay_meth | meth_2.1 |
| collection_date | 2017-05-06T00:00:00 |
| comments | 42375_1_16S_UNSW_AGCTTGAC_ACGACGTG_BM3J6 |
| conductivity (dS/m) | 0.1106 |
| conductivity_meth | meth_2.1 |
| data_generated | 2018-01-31 |
| data_type | MiSeq 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads.bioplatforms.com/bpa/base/raw/amplicons/16s/ramaciotti/BPAOPS-502/ |
| date_of_transfer | 2018-01-31 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.1 |
| depth_upper (m) | 0.0 |
| description | BASE |
| dilution | 1:10 |
| elev (m) | 100.0 |
| env_medium | Soil [ENVO_00001998] |
| facility | RAMACIOTTI |
| facility_code | ramaciotti |
| flow_id | BM3J6 |
| folder_name | 20180131_UNSW_BPA_BASE_BM3J6 |
| geo_loc_name | Australia:Northern Territory [GAZ_00002787] |
| lat_lon (decimal_degrees) | -16.112372 130.950296 |
| latitude (decimal_degrees) | -16.112372 |
| local_class | Vertosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 130.950296 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| nucl_acid_ext | meth_3.1.1 |
| organic_carbon (%) | 1.51 |
| organic_carbon_meth | meth_2.1 |
| pcr_1_to_10 | P |
| ph_solid_h2o | 6.91 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 113.0 |
| phosphorus_colwell_meth | meth_2.1 |
| read_length | 300bp |
| reads | 60591 |
| sample_database_file | AM_db_v4.2_202508201559.db |
| sample_extraction_id | 42375_1 |
| sample_id | 102.100.100/42375 |
| sample_metadata_ingest_date | 2021-04-23 11:13:48 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; Lat_lon_reduce_sig_fig_curation_round_6dec_UPDATE_xlsx; |
| sample_submission_date | 2018-01-31 |
| sample_type | Soil |
| sand (%) | 40.0 |
| sand_meth | meth_2.1 |
| silt (%) | 11.0 |
| silt_meth | meth_2.1 |
| source_mat_id | 102.100.100/42375 |
| target | 16S |
| ticket | BPAOPS-502 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/42375 |
| utc_date_sampled | 2017-05-06 |
| water_content (%) | 2.717 |
| water_content_soil_meth | meth_2.1 |