BASE Amplicons 16S 42387_1 BWYGW
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2018-11-18 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Soil |
| amplicon | 16S |
| analysis_software_version | 2.6.2.3 |
| archive_ingestion_date | 2018-08-22 |
| base_amplicon_linkage | BWYGW |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/16s/ramaciotti/BPAOPS-678/ |
| bioplatforms_project | Biome of Australia Soil Environments (BASE) |
| biotic_relationship | Free-living |
| clay (%) | 2.81 |
| clay_meth | meth_1.19 |
| collection_date | 2008-06-07T00:00:00 |
| comments | 42387_1_16S_UNSW_GTCAATTG_ACGCGTGA_BWYGW |
| conductivity (dS/m) | 3.65 |
| conductivity_meth | meth_1.19 |
| data_generated | 2018-08-22 |
| data_type | MiSeq 16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads.bioplatforms.com/bpa/base/raw/amplicons/16s/ramaciotti/BPAOPS-678/ |
| date_of_transfer | 2018-08-20 |
| depth (m) | 0.0 |
| depth_lower (m) | 0.1 |
| depth_upper (m) | 0.0 |
| description | BASE |
| dilution | neat |
| elev (m) | 160.4 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.3 Other minimal use |
| env_medium | Soil [ENVO_00001998] |
| facility | RAMACIOTTI |
| facility_code | ramaciotti |
| flow_id | BWYGW |
| folder_name | 20180820_UNSW_BPA_BASE_BWYGW |
| funding_agency | Geocsience Australia (GA)|Australian Microbiome |
| geo_loc_name | Australia:Western Australia [GAZ_00002789] |
| lat_lon (decimal_degrees) | -20.7195 120.9245 |
| latitude (decimal_degrees) | -20.7195 |
| local_class | Tenosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 120.9245 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| nucl_acid_ext | meth_3.1.1 |
| organic_carbon (%) | 1.204 |
| organic_carbon_meth | meth_1.19 |
| pcr | P |
| ph | 6.0125 |
| ph_meth | meth_1.19 |
| ph_solid_h2o | 6.0125 |
| ph_solid_h2o_meth | meth_2.1 |
| read_length | 300bp |
| reads | 181916 |
| samp_mat_process | meth_1.19 |
| sample_attribution | Geoscience Australia (GA)|Australian Microbiome |
| sample_database_file | AM_db_v4.2_202508201559.db |
| sample_extraction_id | 42387_1 |
| sample_id | 102.100.100/42387 |
| sample_metadata_ingest_date | 2021-04-23 11:13:48 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; GA_NGSA_metadata_20220705_AM_formatted_UPDATE_xlsx; AM_curate_geo_loc_name_UPDATE_xlsx; GA_NGSA_samp_mat_process_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_site_location_description | Telfer |
| sample_submission_date | 2018-08-20 |
| sample_type | Soil |
| sand (%) | 89.32 |
| sand_meth | meth_1.19 |
| silt (%) | 7.87 |
| silt_meth | meth_1.19 |
| source_mat_id | 102.100.100/42387 |
| store_cond | air-dried |
| synonyms | GA_sampleID:2007190017001 Coarse |
| target | 16S |
| ticket | BPAOPS-678 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/42387 |
| utc_date_sampled | 2008-06-07 |