BASE Amplicons 16S 8206_1 A5K1H

Narrabri, None

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Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2015-04-01
Access Control Mode date
Sequence Data Type illumina-amplicons
am_environment Soil
ammonium_nitrogen_wt (mg/kg) 77.0
ammonium_nitrogen_wt_meth meth_2.1
amplicon 16S
analysis_software_version 2.3.0.3
archive_ingestion_date 2015-01-01
base_amplicon_linkage A5K1H
base_url https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/16s/agrf/BRLOPS-273/20140307_AGRF_BASE_A5K1H/
bioplatforms_project Biome of Australia Soil Environments (BASE)
biotic_relationship Free-living
boron_hot_cacl2 (mg/kg) 3.51
boron_hot_cacl2_meth meth_2.1
collection_date 2013-02-20T00:00:00
color GRBR
conductivity (dS/m) 0.516
conductivity_meth meth_2.1
data_generated 2015-01-01
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2015-01-01
depth (m) 0.0
depth_lower (m) 0.1
depth_upper (m) 0.0
dilution 1:10
dtpa_copper (mg/kg) 2.22
dtpa_copper_meth meth_2.1
dtpa_iron (mg/kg) 33.42
dtpa_iron_meth meth_2.1
dtpa_manganese (mg/kg) 110.24
dtpa_manganese_meth meth_2.1
dtpa_zinc (mg/kg) 5.38
dtpa_zinc_meth meth_2.1
elev (m) 201.0
env_broad_scale 1 Conservation and Natural Environments
env_local_scale 1.3.3 Residual native cover
env_medium Soil [ENVO_00001998]
exc_aluminium (meq/100g) 0.102
exc_aluminium_meth meth_2.1
exc_calcium (meq/100g) 37.22
exc_calcium_meth meth_2.1
exc_magnesium (meq/100g) 8.53
exc_magnesium_meth meth_2.1
exc_potassium (meq/100g) 3.86
exc_potassium_meth meth_2.1
exc_sodium (meq/100g) 0.14
exc_sodium_meth meth_2.1
facility AGRF
facility_code agrf
flow_cell_id AHK1H
flow_id A5K1H
general_env_feature Riverine (rivers and streams)
geo_loc_name Australia:New South Wales [GAZ_00002793]
gravel (%) 5.0
gravel_meth meth_2.1
index CTAACCTCCGCT
lat_lon (decimal_degrees) -30.200303 149.593933
latitude (decimal_degrees) -30.200303
local_class Vertosol
local_class_meth meth_2.27
longitude (decimal_degrees) 149.593933
ncbi_bioproject_accession PRJNA317932
ncbi_bioproject_accession_number PRJNA317932
ncbi_biosample_accession SAMN04873845
ncbi_biosample_accession_number SAMN04873845
nitrate_nitrogen (mg/kg) 151.0
nitrate_nitrogen_meth meth_2.1
nucl_acid_ext meth_3.1.1
organic_carbon (%) 4.9
organic_carbon_meth meth_2.1
pcr_1_to_10 P
ph 6.1
ph_meth meth_2.1
ph_solid_h2o 6.4
ph_solid_h2o_meth meth_2.1
phosphorus_colwell (mg/kg) 230.0
phosphorus_colwell_meth meth_2.1
potassium_colwell (mg/kg) 1512.0
potassium_colwell_meth meth_2.1
read_length 300bp
reads 210136
sample_database_file AM_db_v4.2_202508201559.db
sample_extraction_id 8206_1
sample_id 102.100.100/8206
sample_metadata_ingest_date 2021-04-23 11:13:48
sample_metadata_ingest_file BASE_NEW_CKAN_Curated_depth_xlsx
sample_metadata_update_history soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx;
sample_name 8206_1_16s_AGRF_CTAACCTCCGCT
sample_site_location_description Narrabri
sample_submission_date 2015-01-01
sample_type Soil
sequencing_facility AGRF
source_mat_id 102.100.100/8206
store_cond frozen
sulphur (mg/kg) 34.4
sulphur_meth meth_2.1
target 16S
texture 2.0
texture_meth meth_2.1
ticket BRLOPS-273
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/8206
utc_date_sampled 2013-02-20
vegetation_type Other
water_content (%) 10.0
water_content_soil_meth meth_2.1