BASE Amplicons 16S 8207_1 A5K1H

Narrabri, None

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2015-04-01
Access Control Mode date
Sequence Data Type illumina-amplicons
am_environment Soil
ammonium_nitrogen_wt (mg/kg) 15.0
ammonium_nitrogen_wt_meth meth_2.1
amplicon 16S
analysis_software_version 2.3.0.3
archive_ingestion_date 2015-01-01
base_amplicon_linkage A5K1H
base_url https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/16s/agrf/BRLOPS-273/20140307_AGRF_BASE_A5K1H/
bioplatforms_project Biome of Australia Soil Environments (BASE)
biotic_relationship Free-living
boron_hot_cacl2 (mg/kg) 1.35
boron_hot_cacl2_meth meth_2.1
collection_date 2013-02-20T00:00:00
color GR
conductivity (dS/m) 0.075
conductivity_meth meth_2.1
data_generated 2015-01-01
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2015-01-01
depth (m) 0.2
depth_lower (m) 0.3
depth_upper (m) 0.2
dilution 1:10
dtpa_copper (mg/kg) 1.84
dtpa_copper_meth meth_2.1
dtpa_iron (mg/kg) 13.95
dtpa_iron_meth meth_2.1
dtpa_manganese (mg/kg) 18.3
dtpa_manganese_meth meth_2.1
dtpa_zinc (mg/kg) 0.84
dtpa_zinc_meth meth_2.1
elev (m) 201.0
env_broad_scale 3 Production from Dryland Agriculture and Plantations
env_local_scale 3.3.1 Cereals
env_medium Soil [ENVO_00001998]
exc_aluminium (meq/100g) 0.134
exc_aluminium_meth meth_2.1
exc_calcium (meq/100g) 20.17
exc_calcium_meth meth_2.1
exc_magnesium (meq/100g) 6.87
exc_magnesium_meth meth_2.1
exc_potassium (meq/100g) 1.39
exc_potassium_meth meth_2.1
exc_sodium (meq/100g) 0.54
exc_sodium_meth meth_2.1
facility AGRF
facility_code agrf
flow_cell_id AHK1H
flow_id A5K1H
general_env_feature Riverine (rivers and streams)
geo_loc_name Australia:New South Wales [GAZ_00002793]
gravel (%) 5.0
gravel_meth meth_2.1
index CAGGCGTATTGG
lat_lon (decimal_degrees) -30.201225 149.595675
latitude (decimal_degrees) -30.201225
local_class Vertosol
local_class_meth meth_2.27
longitude (decimal_degrees) 149.595675
ncbi_bioproject_accession PRJNA317932
ncbi_bioproject_accession_number PRJNA317932
ncbi_biosample_accession SAMN04873846
ncbi_biosample_accession_number SAMN04873846
nitrate_nitrogen (mg/kg) 2.0
nitrate_nitrogen_meth meth_2.1
nucl_acid_ext meth_3.1.1
organic_carbon (%) 1.14
organic_carbon_meth meth_2.1
pcr_1_to_10 P
ph 7.1
ph_meth meth_2.1
ph_solid_h2o 7.9
ph_solid_h2o_meth meth_2.1
phosphorus_colwell (mg/kg) 91.0
phosphorus_colwell_meth meth_2.1
potassium_colwell (mg/kg) 543.0
potassium_colwell_meth meth_2.1
read_length 300bp
reads 205908
sample_database_file AM_db_v4.2_202508201559.db
sample_extraction_id 8207_1
sample_id 102.100.100/8207
sample_metadata_ingest_date 2021-04-23 11:13:48
sample_metadata_ingest_file BASE_NEW_CKAN_Curated_depth_xlsx
sample_metadata_update_history soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx;
sample_name 8207_1_16s_AGRF_CAGGCGTATTGG
sample_site_location_description Narrabri
sample_submission_date 2015-01-01
sample_type Soil
sequencing_facility AGRF
source_mat_id 102.100.100/8207
store_cond frozen
sulphur (mg/kg) 13.1
sulphur_meth meth_2.1
target 16S
texture 3.0
texture_meth meth_2.1
ticket BRLOPS-273
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/8207
utc_date_sampled 2013-02-20
vegetation_type Other
water_content (%) 10.0
water_content_soil_meth meth_2.1