BASE Amplicons 18S 39331_1 B5KFM
Dataset size is: 0.00 Bit
Data and Resources
This dataset has no data
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2017-10-02 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 28.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | 18S |
| analysis_software_version | 2.6.2.3 |
| archive_ingestion_date | 2017-07-05 |
| base_amplicon_linkage | B5KFM |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/18s/ramaciotti/BPAOPS-218/ |
| bioplatforms_project | Biome of Australia Soil Environments (BASE) |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 0.98 |
| boron_hot_cacl2_meth | meth_2.1 |
| clay (%) | 21.15594329 |
| clay_meth | meth_2.1 |
| collection_date | 2017-05-11T00:00:00 |
| color | GR |
| comments | 39331_1_18S_UNSW_GACACATT_CTAGAGCT_B5KFM |
| conductivity (dS/m) | 0.092 |
| conductivity_meth | meth_2.1 |
| data_generated | 2017-07-05 |
| data_type | MiSeq 18S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| dataset_url | https://downloads.bioplatforms.com/bpa/base/raw/amplicons/18s/ramaciotti/BPAOPS-218/ |
| date_of_transfer | 2017-07-04 |
| depth (m) | 0.2 |
| depth_lower (m) | 0.3 |
| depth_upper (m) | 0.2 |
| description | BASE |
| dilution | neat |
| dtpa_copper (mg/kg) | 0.21 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 271.07 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 0.54 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 0.11 |
| dtpa_zinc_meth | meth_2.1 |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 5.769 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 0.57 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 0.44 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.17 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.05 |
| exc_sodium_meth | meth_2.1 |
| facility | RAMACIOTTI |
| facility_code | ramaciotti |
| flow_id | B5KFM |
| folder_name | 20170704_UNSW_BPA_BASE_B5KFM |
| general_env_feature | Montane |
| geo_loc_name | Australia:Victoria [GAZ_00002786] |
| gravel (%) | 0.0 |
| gravel_meth | meth_2.1 |
| lat_lon (decimal_degrees) | -37.794544 145.841171 |
| latitude (decimal_degrees) | -37.794544 |
| local_class | Dermosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 145.841171 |
| ncbi_bioproject_accession_number | PRJNA385736 |
| nitrate_nitrogen (mg/kg) | 20.0 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| organic_carbon (%) | 4.47 |
| organic_carbon_meth | meth_2.1 |
| pcr_neat | P |
| ph | 4.2 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 4.7 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 14.0 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 79.0 |
| potassium_colwell_meth | meth_2.1 |
| read_length | 150bp |
| reads | 113564 |
| sample_database_file | AM_db_v4.2_202508201559.db |
| sample_extraction_id | 39331_1 |
| sample_id | 102.100.100/39331 |
| sample_metadata_ingest_date | 2021-04-23 11:13:48 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; Lat_lon_reduce_sig_fig_curation_round_6dec_UPDATE_xlsx; |
| sample_submission_date | 2017-07-04 |
| sample_type | Soil |
| sand (%) | 47.87350055 |
| sand_meth | meth_2.1 |
| silt (%) | 30.97055616 |
| silt_meth | meth_2.1 |
| source_mat_id | 102.100.100/39331 |
| sulphur (mg/kg) | 10.0 |
| sulphur_meth | meth_2.1 |
| target | 18S |
| texture | 1.5 |
| texture_meth | meth_2.1 |
| ticket | BPAOPS-218 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/39331 |
| utc_date_sampled | 2017-05-11 |
| water_content (%) | 51.87713311 |
| water_content_soil_meth | meth_2.1 |