BASE Amplicons A16S 12615_1 A5GC5
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Data and Resources
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BASE_A16S_AGRF_AEL4U_checksums.md5 Metadata Only MD5
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BASE_A16S_AGRF_A5GC5_checksums.md5 Metadata Only MD5
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12615_1_A16S_AGRF_CGTACTAG_CTAAG... Metadata Only FASTQ
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12615_1_A16S_AGRF_CGTACTAG_CTAAG... Metadata Only FASTQ
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12615_1_A16S_AGRF_CGTACTAG_CTAAG... Metadata Only FASTQ
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BASE_A16S_AGRF_AENL1_checksums.md5 Metadata Only MD5
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BASE_A16S_AGRF_AEMV2_checksums.md5 Metadata Only MD5
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BASE_A16S_AGRF_AENKY_checksums.md5 Metadata Only MD5
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12615_1_A16S_AGRF_CGTACTAG_CTAAG... Metadata Only FASTQ
This data is made available openly under a Creative Commons Attribution license.
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2015-07-21 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 1.0 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | A16S |
| analysis_software_version | 2.4.1.3 |
| archive_ingestion_date | 2015-04-22 |
| base_amplicon_linkage | A5GC5 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/a16s/agrf/BRLOPS-611/20150421_AGRF_BASE_A5GC5/ |
| bioplatforms_project | Biome of Australia Soil Environments (BASE) |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 0.2 |
| boron_hot_cacl2_meth | meth_2.1 |
| clay (%) | 10.91 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 67.0 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2014-01-23T00:00:00 |
| color | GRYW |
| conductivity (dS/m) | 0.029 |
| conductivity_meth | meth_2.1 |
| data_generated | 2015-04-22 |
| data_type | MiSeq A16S |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2015-04-22 |
| depth (m) | 0.2 |
| depth_lower (m) | 0.3 |
| depth_upper (m) | 0.2 |
| description | BASE A16S amplicon |
| dilution | NEAT |
| dtpa_copper (mg/kg) | 1.14 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 41.66 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 3.37 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 1.68 |
| dtpa_zinc_meth | meth_2.1 |
| elev (m) | 1014.0 |
| env_broad_scale | 3 Production from Dryland Agriculture and Plantations |
| env_local_scale | 3.4.1 Tree fruits |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.262 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 1.7 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 0.28 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.33 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.05 |
| exc_sodium_meth | meth_2.1 |
| facility | AGRF |
| facility_code | agrf |
| fine_sand (%) | 16.11 |
| fine_sand_meth | meth_2.1 |
| flow_cell_id | A5GC5 |
| flow_id | A5GC5 |
| folder_name | 20150421_AGRF_BASE_AENL1 |
| general_env_feature | Temperate |
| geo_loc_name | Australia:New South Wales [GAZ_00002793] |
| gravel (%) | 5.0 |
| gravel_meth | meth_2.1 |
| hyperspectral_analysis | DOI 10.5281/zenodo.6265730 |
| hyperspectral_analysis_meth | meth_2.26 |
| index | CGTACTAG-CTA |
| lat_lon (decimal_degrees) | -33.659823 150.265414 |
| latitude (decimal_degrees) | -33.659823 |
| local_class | Kandosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 150.265414 |
| ncbi_bioproject_accession | PRJNA317932 |
| ncbi_bioproject_accession_number | PRJNA317932 |
| ncbi_biosample_accession | SAMN04874252 |
| ncbi_biosample_accession_number | SAMN04874252 |
| nitrate_nitrogen (mg/kg) | 3.0 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| organic_carbon (%) | 0.83 |
| organic_carbon_meth | meth_2.1 |
| ph | 5.0 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 5.8 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 68.0 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 128.0 |
| potassium_colwell_meth | meth_2.1 |
| read_length | 300bp |
| reads | 102206 |
| sample_database_file | AM_db_v4.2_202412051535.db |
| sample_extraction_id | 12615_1 |
| sample_id | 102.100.100/12615 |
| sample_metadata_ingest_date | 2021-04-23 11:13:48 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; AM_visNIR_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_name | 12615_1_A16S_AGRF_CGTACTAG-CTAAGCCT_A5GC5 |
| sample_site_location_description | Blackheath |
| sample_submission_date | 2015-04-22 |
| sample_type | Soil |
| sand (%) | 83.11 |
| sand_meth | meth_2.1 |
| sequencing_facility | AGRF |
| sequencing_run_number | 150323_M00566_0090_000000000-A5GC5 |
| silt (%) | 5.98 |
| silt_meth | meth_2.1 |
| slope_gradient (%) | 1.0 |
| source_mat_id | 102.100.100/12615 |
| store_cond | frozen |
| sulphur (mg/kg) | 3.7 |
| sulphur_meth | meth_2.1 |
| target | A16S |
| texture | 1.5 |
| texture_meth | meth_2.1 |
| ticket | BRLOPS-611 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/12615 |
| utc_date_sampled | 2014-01-23 |
| vegetation_type | Other |
| water_content (%) | 10.76334551 |
| water_content_soil_meth | meth_2.1 |