BASE Amplicons ITS 10624_1 AC988
Dataset size is: 12.52 MiB
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Sequence Data Type | illumina-amplicons |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 14.0 |
| amplicon | ITS |
| analysis_software_version | 2.5.1.3 |
| archive_ingestion_date | 2014-11-11 |
| arsenic (μg/kg) | 6480.0 |
| base_amplicon_linkage | AC988 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/temp_amd/base/raw/amplicons/its/ramaciotti/BRLOPS-498/ |
| boron_hot_cacl2 (mg/kg) | 1.07 |
| cadmium (μg/kg) | 2612.0 |
| chromium (μg/kg) | 203600.0 |
| clay (%) | 37.14 |
| coarse_sand (%) | 16.82 |
| cobalt (μg/kg) | 56000.0 |
| collection_date | 2013-04-10 |
| color | BRBK |
| comments | A07 |
| conductivity (dS/m) | 0.245 |
| data_generated | 2014-11-11 |
| data_type | MiSeq ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/2.0.2/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2014-11-11 |
| depth (m) | 0.2 |
| depth_lower (m) | 0.3 |
| depth_upper (m) | 0.2 |
| description | BASE ITS amplicon |
| dilution | neat |
| dtpa_copper (mg/kg) | 1.72 |
| dtpa_iron (mg/kg) | 21.67 |
| dtpa_manganese (mg/kg) | 69.91 |
| dtpa_zinc (mg/kg) | 1.87 |
| elev (m) | 47.0 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1.3 National park |
| exc_aluminium (meq/100g) | 0.083 |
| exc_calcium (meq/100g) | 44.9 |
| exc_magnesium (meq/100g) | 4.91 |
| exc_potassium (meq/100g) | 0.75 |
| exc_sodium (meq/100g) | 0.55 |
| facility | RAMACIOTTI |
| facility_code | ramaciotti |
| fine_sand (%) | 29.04 |
| flow_cell_id | AC988 |
| flow_id | AC988 |
| folder_name | 20141111_UNSW_BPA_BASE_AC988 |
| geo_loc_name | Australia |
| gravel (%) | 5.0 |
| index | AATGTCCGTGAC |
| lat_lon (decimal_degrees) | -10.48251 105.55591 |
| latitude (decimal_degrees) | -10.48251 |
| lead (μg/kg) | 8120.0 |
| local_class | LatLon out of range |
| longitude (decimal_degrees) | 105.55591 |
| molybdenum (μg/kg) | 828.0 |
| ncbi_bioproject_accession | PRJNA317932 |
| ncbi_biosample_accession | SAMN04874107 |
| nitrate_nitrogen (mg/kg) | 6.0 |
| organic_carbon (%) | 1.16 |
| pcr_1_to_10 | F |
| pcr_1_to_100 | F |
| pcr_neat | F |
| ph | 7.3 |
| ph_solid_h2o | 7.9 |
| phosphorus_colwell (mg/kg) | 290.0 |
| potassium_colwell (mg/kg) | 292.0 |
| read_length | 300bp |
| reads | 28627 |
| sample_database_file | AM_db_v2_202105280954.db |
| sample_extraction_id | 10624_1 |
| sample_id | 102.100.100/10624 |
| sample_metadata_ingest_date | 2021-04-23_00:00:00 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | CSBP_140327_BIS068_003_xmas_island_metals_xls; soil_types_20210420_xlsx; |
| sample_name | 10624_1_ITS_UNSW_AATGTCCGTGAC_AC988 |
| sample_site_location_description | xmas island |
| sample_submission_date | 2014-11-11 |
| sample_type | Soil |
| sand (%) | 45.86 |
| selenium (μg/kg) | 776.0 |
| sequencing_facility | UNSW |
| sequencing_run_number | 141107_M01153_0029_000000000-AC988 |
| silt (%) | 17.0 |
| slope_gradient (%) | 1.0 |
| source_mat_id | 102.100.100/10624 |
| store_cond | Frozen |
| sulphur (mg/kg) | 15.4 |
| target | ITS |
| texture | 3.0 |
| ticket | BRLOPS-498 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/10624 |
| utc_date_sampled | 2013-04-10 |
| water_content (%) | 32.88149517 |