BASE Amplicons ITS 12507_1 AC988

Narrabri, MiSeq ITS

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Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Sequence Data Type illumina-amplicons
am_environment Soil
ammonium_nitrogen_wt (mg/kg) 1e-10
amplicon ITS
analysis_software_version 2.5.1.3
archive_ingestion_date 2014-11-11
base_amplicon_linkage AC988
base_url https://downloads-qcif.bioplatforms.com/bpa/temp_amd/base/raw/amplicons/its/ramaciotti/BRLOPS-498/
boron_hot_cacl2 (mg/kg) 1.04
clay (%) 35.61
coarse_sand (%) 6.17
collection_date 2014-04-29
color GR
comments F10
conductivity (dS/m) 0.121
data_generated 2014-11-11
data_type MiSeq ITS
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/2.0.2/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2014-11-11
depth (m) 0.0
depth_lower (m) 0.1
depth_upper (m) 0.0
description BASE ITS amplicon
dilution neat
dtpa_copper (mg/kg) 1.9
dtpa_iron (mg/kg) 13.01
dtpa_manganese (mg/kg) 11.08
dtpa_zinc (mg/kg) 0.89
elev (m) 199.68927
env_broad_scale 3 Production from Dryland Agriculture and Plantations
env_local_scale 3.3.6 Cotton
exc_aluminium (meq/100g) 0.094
exc_calcium (meq/100g) 21.94
exc_magnesium (meq/100g) 9.07
exc_potassium (meq/100g) 1.75
exc_sodium (meq/100g) 0.49
facility RAMACIOTTI
facility_code ramaciotti
fine_sand (%) 27.39
flow_cell_id AC988
flow_id AC988
folder_name 20141111_UNSW_BPA_BASE_AC988
general_env_feature Temperate
geo_loc_name Australia
gravel (%) 0.0
index TGGCATACGGCA
lat_lon (decimal_degrees) -30.20134804 149.596892
latitude (decimal_degrees) -30.20134804
local_class Vertosol
longitude (decimal_degrees) 149.596892
ncbi_bioproject_accession PRJNA317932
ncbi_biosample_accession SAMN04874192
nitrate_nitrogen (mg/kg) 7.0
organic_carbon (%) 1.3
pcr_1_to_10 F
pcr_1_to_100 F
pcr_neat F
ph 6.9
ph_solid_h2o 7.7
phosphorus_colwell (mg/kg) 68.0
potassium_colwell (mg/kg) 656.0
read_length 300bp
reads 18260
sample_database_file AM_db_v2_202105280954.db
sample_extraction_id 12507_1
sample_id 102.100.100/12507
sample_metadata_ingest_date 2021-04-23_00:00:00
sample_metadata_ingest_file BASE_NEW_CKAN_Curated_depth_xlsx
sample_metadata_update_history soil_types_20210420_xlsx;
sample_name 12507_1_ITS_UNSW_TGGCATACGGCA_AC988
sample_site_location_description Narrabri
sample_submission_date 2014-11-11
sample_type Soil
sand (%) 33.56
sequencing_facility UNSW
sequencing_run_number 141107_M01153_0029_000000000-AC988
silt (%) 30.84
slope_gradient (%) 0.0
source_mat_id 102.100.100/12507
store_cond Frozen
sulphur (mg/kg) 36.5
target ITS
texture 3.0
ticket BRLOPS-498
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/12507
utc_date_sampled 2014-04-29
vegetation_type Other
water_content (%) 14.45833333