BASE Amplicons ITS 12561_1 AC988
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Sequence Data Type | illumina-amplicons |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 2.0 |
| amplicon | ITS |
| analysis_software_version | 2.5.1.3 |
| archive_ingestion_date | 2014-11-11 |
| base_amplicon_linkage | AC988 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/temp_amd/base/raw/amplicons/its/ramaciotti/BRLOPS-498/ |
| boron_hot_cacl2 (mg/kg) | 0.4 |
| clay (%) | 26.35 |
| coarse_sand (%) | 24.87 |
| collection_date | 2014-11-04 |
| color | DKGR |
| comments | G04 |
| conductivity (dS/m) | 0.019 |
| data_generated | 2014-11-11 |
| data_type | MiSeq ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/2.0.2/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2014-11-11 |
| depth (m) | 0.2 |
| depth_lower (m) | 0.3 |
| depth_upper (m) | 0.2 |
| description | BASE ITS amplicon |
| dilution | neat |
| dtpa_copper (mg/kg) | 1.65 |
| dtpa_iron (mg/kg) | 143.42 |
| dtpa_manganese (mg/kg) | 20.26 |
| dtpa_zinc (mg/kg) | 4.44 |
| elev (m) | 1093.0 |
| env_broad_scale | 1 Conservation and Natural Environments |
| env_local_scale | 1.1.3 National park |
| exc_aluminium (meq/100g) | 0.071 |
| exc_calcium (meq/100g) | 8.26 |
| exc_magnesium (meq/100g) | 3.5 |
| exc_potassium (meq/100g) | 0.19 |
| exc_sodium (meq/100g) | 0.04 |
| facility | RAMACIOTTI |
| facility_code | ramaciotti |
| fine_sand (%) | 24.36 |
| flow_cell_id | AC988 |
| flow_id | AC988 |
| folder_name | 20141111_UNSW_BPA_BASE_AC988 |
| general_env_feature | Temperate |
| geo_loc_name | Australia |
| gravel (%) | 5.0 |
| index | ATGTGGGACCCA |
| lat_lon (decimal_degrees) | -35.881 149.0076 |
| latitude (decimal_degrees) | -35.881 |
| local_class | Kurosol |
| longitude (decimal_degrees) | 149.0076 |
| ncbi_bioproject_accession | PRJNA317932 |
| ncbi_biosample_accession | SAMN04874216 |
| nitrate_nitrogen (mg/kg) | 3.0 |
| organic_carbon (%) | 1.85 |
| pcr_1_to_10 | P |
| pcr_1_to_100 | F |
| pcr_neat | P |
| ph | 5.2 |
| ph_solid_h2o | 6.0 |
| phosphorus_colwell (mg/kg) | 10.0 |
| potassium_colwell (mg/kg) | 74.0 |
| read_length | 300bp |
| reads | 182838 |
| sample_database_file | AM_db_v2_202105280954.db |
| sample_extraction_id | 12561_1 |
| sample_id | 102.100.100/12561 |
| sample_metadata_ingest_date | 2021-04-23_00:00:00 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; |
| sample_name | 12561_1_ITS_UNSW_ATGTGGGACCCA_AC988 |
| sample_site_location_description | Namadgi NP |
| sample_submission_date | 2014-11-11 |
| sample_type | Soil |
| sand (%) | 49.24 |
| sequencing_facility | UNSW |
| sequencing_run_number | 141107_M01153_0029_000000000-AC988 |
| silt (%) | 24.42 |
| slope_gradient (%) | 0.0 |
| source_mat_id | 102.100.100/12561 |
| store_cond | Frozen |
| sulphur (mg/kg) | 2.4 |
| target | ITS |
| texture | 2.5 |
| ticket | BRLOPS-498 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/12561 |
| utc_date_sampled | 2014-11-04 |
| vegetation_type | Grassland |
| water_content (%) | 18.20330969 |