BASE Amplicons ITS 12570_1 AC988

Namadgi NP, MiSeq ITS

Dataset size is: 0.00 Bit

Log in or Register to access resource
 
 

 

Data and Resources

This data is made available openly under a Creative Commons Attribution license. Please see the initiative Data Policy for attribution information.

Additional Info Show Blank Fields

Field Value
Geospatial Coverage

Dataset extent

Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Sequence Data Type illumina-amplicons
am_environment Soil
ammonium_nitrogen_wt (mg/kg) 8.0
amplicon ITS
analysis_software_version 2.5.1.3
archive_ingestion_date 2014-11-11
base_amplicon_linkage AC988
base_url https://downloads-qcif.bioplatforms.com/bpa/temp_amd/base/raw/amplicons/its/ramaciotti/BRLOPS-498/
boron_hot_cacl2 (mg/kg) 0.44
clay (%) 16.49
coarse_sand (%) 33.61
collection_date 2014-11-05
color BR
comments H05
conductivity (dS/m) 0.047
data_generated 2014-11-11
data_type MiSeq ITS
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/2.0.2/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2014-11-11
depth (m) 0.0
depth_lower (m) 0.1
depth_upper (m) 0.0
description BASE ITS amplicon
dilution neat
dtpa_copper (mg/kg) 0.68
dtpa_iron (mg/kg) 121.43
dtpa_manganese (mg/kg) 61.84
dtpa_zinc (mg/kg) 3.19
elev (m) 1099.0
env_broad_scale 1 Conservation and Natural Environments
env_local_scale 1.1.3 National park
exc_aluminium (meq/100g) 0.474
exc_calcium (meq/100g) 4.4
exc_magnesium (meq/100g) 1.43
exc_potassium (meq/100g) 0.52
exc_sodium (meq/100g) 0.03
facility RAMACIOTTI
facility_code ramaciotti
fine_sand (%) 25.0
flow_cell_id AC988
flow_id AC988
folder_name 20141111_UNSW_BPA_BASE_AC988
general_env_feature Temperate
geo_loc_name Australia
gravel (%) 5.0
index GACTCGAATCGT
lat_lon (decimal_degrees) -35.8748166 149.01165
latitude (decimal_degrees) -35.8748166
local_class Kurosol
longitude (decimal_degrees) 149.01165
ncbi_bioproject_accession PRJNA317932
ncbi_biosample_accession SAMN04874225
nitrate_nitrogen (mg/kg) 1e-10
organic_carbon (%) 2.88
pcr_1_to_10 F
pcr_1_to_100 P
pcr_neat P
ph 4.6
ph_solid_h2o 5.3
phosphorus_colwell (mg/kg) 21.0
potassium_colwell (mg/kg) 228.0
read_length 300bp
reads 109394
sample_database_file AM_db_v2_202105280954.db
sample_extraction_id 12570_1
sample_id 102.100.100/12570
sample_metadata_ingest_date 2021-04-23_00:00:00
sample_metadata_ingest_file BASE_NEW_CKAN_Curated_depth_xlsx
sample_metadata_update_history soil_types_20210420_xlsx;
sample_name 12570_1_ITS_UNSW_GACTCGAATCGT_AC988
sample_site_location_description Namadgi NP
sample_submission_date 2014-11-11
sample_type Soil
sand (%) 58.61
sequencing_facility UNSW
sequencing_run_number 141107_M01153_0029_000000000-AC988
silt (%) 24.9
slope_gradient (%) 7.5
source_mat_id 102.100.100/12570
store_cond Frozen
sulphur (mg/kg) 4.5
target ITS
texture 2.0
ticket BRLOPS-498
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/12570
utc_date_sampled 2014-11-05
vegetation_type Woodland
water_content (%) 8.608414239