BASE Amplicons ITS 12617_1 AC988
Dataset size is: 0.00 Bit
Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members |
| Access Control Date | 2015-02-09 |
| Access Control Mode | date |
| Sequence Data Type | illumina-amplicons |
| am_environment | Soil |
| ammonium_nitrogen_wt (mg/kg) | 1e-10 |
| ammonium_nitrogen_wt_meth | meth_2.1 |
| amplicon | ITS |
| analysis_software_version | 2.5.1.3 |
| archive_ingestion_date | 2014-11-11 |
| base_amplicon_linkage | AC988 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/its/ramaciotti/BRLOPS-498/ |
| bioplatforms_project | Biome of Australia Soil Environments (BASE) |
| biotic_relationship | Free-living |
| boron_hot_cacl2 (mg/kg) | 0.19 |
| boron_hot_cacl2_meth | meth_2.1 |
| clay (%) | 9.15 |
| clay_meth | meth_2.1 |
| coarse_sand (%) | 69.92 |
| coarse_sand_meth | meth_2.1 |
| collection_date | 2014-01-23T00:00:00 |
| color | BRYW |
| comments | E03 |
| conductivity (dS/m) | 0.015 |
| conductivity_meth | meth_2.1 |
| data_generated | 2014-11-11 |
| data_type | MiSeq ITS |
| database_schema_definitions_url | https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx |
| date_of_transfer | 2014-11-11 |
| depth (m) | 0.2 |
| depth_lower (m) | 0.3 |
| depth_upper (m) | 0.2 |
| description | BASE ITS amplicon |
| dilution | neat |
| dtpa_copper (mg/kg) | 0.48 |
| dtpa_copper_meth | meth_2.1 |
| dtpa_iron (mg/kg) | 31.84 |
| dtpa_iron_meth | meth_2.1 |
| dtpa_manganese (mg/kg) | 0.4 |
| dtpa_manganese_meth | meth_2.1 |
| dtpa_zinc (mg/kg) | 0.78 |
| dtpa_zinc_meth | meth_2.1 |
| elev (m) | 1014.0 |
| env_broad_scale | 3 Production from Dryland Agriculture and Plantations |
| env_local_scale | 3.4.1 Tree fruits |
| env_medium | Soil [ENVO_00001998] |
| exc_aluminium (meq/100g) | 0.282 |
| exc_aluminium_meth | meth_2.1 |
| exc_calcium (meq/100g) | 1.77 |
| exc_calcium_meth | meth_2.1 |
| exc_magnesium (meq/100g) | 0.23 |
| exc_magnesium_meth | meth_2.1 |
| exc_potassium (meq/100g) | 0.1 |
| exc_potassium_meth | meth_2.1 |
| exc_sodium (meq/100g) | 0.02 |
| exc_sodium_meth | meth_2.1 |
| facility | RAMACIOTTI |
| facility_code | ramaciotti |
| fine_sand (%) | 11.73 |
| fine_sand_meth | meth_2.1 |
| flow_cell_id | AC988 |
| flow_id | AC988 |
| folder_name | 20141111_UNSW_BPA_BASE_AC988 |
| general_env_feature | Temperate |
| geo_loc_name | Australia:New South Wales [GAZ_00002793] |
| gravel (%) | 5.0 |
| gravel_meth | meth_2.1 |
| hyperspectral_analysis | DOI 10.5281/zenodo.6265730 |
| hyperspectral_analysis_meth | meth_2.26 |
| index | TGGCAAGACTCT |
| lat_lon (decimal_degrees) | -33.659823 150.265414 |
| latitude (decimal_degrees) | -33.659823 |
| local_class | Kandosol |
| local_class_meth | meth_2.27 |
| longitude (decimal_degrees) | 150.265414 |
| ncbi_bioproject_accession | PRJNA317932 |
| ncbi_bioproject_accession_number | PRJNA317932 |
| ncbi_biosample_accession | SAMN04874254 |
| ncbi_biosample_accession_number | SAMN04874254 |
| nitrate_nitrogen (mg/kg) | 2.0 |
| nitrate_nitrogen_meth | meth_2.1 |
| nucl_acid_ext | meth_3.1.1 |
| organic_carbon (%) | 0.95 |
| organic_carbon_meth | meth_2.1 |
| pcr_1_to_10 | F |
| pcr_1_to_100 | F |
| pcr_neat | P |
| ph | 5.1 |
| ph_meth | meth_2.1 |
| ph_solid_h2o | 5.8 |
| ph_solid_h2o_meth | meth_2.1 |
| phosphorus_colwell (mg/kg) | 39.0 |
| phosphorus_colwell_meth | meth_2.1 |
| potassium_colwell (mg/kg) | 40.0 |
| potassium_colwell_meth | meth_2.1 |
| read_length | 300bp |
| reads | 281073 |
| sample_database_file | AM_db_v4.2_202508201559.db |
| sample_extraction_id | 12617_1 |
| sample_id | 102.100.100/12617 |
| sample_metadata_ingest_date | 2021-04-23 11:13:48 |
| sample_metadata_ingest_file | BASE_NEW_CKAN_Curated_depth_xlsx |
| sample_metadata_update_history | soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; AM_visNIR_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx; |
| sample_name | 12617_1_ITS_UNSW_TGGCAAGACTCT_AC988 |
| sample_site_location_description | Blackheath |
| sample_submission_date | 2014-11-11 |
| sample_type | Soil |
| sand (%) | 81.65 |
| sand_meth | meth_2.1 |
| sequencing_facility | UNSW |
| sequencing_run_number | 141107_M01153_0029_000000000-AC988 |
| silt (%) | 9.2 |
| silt_meth | meth_2.1 |
| slope_gradient (%) | 1.0 |
| source_mat_id | 102.100.100/12617 |
| store_cond | frozen |
| sulphur (mg/kg) | 2.1 |
| sulphur_meth | meth_2.1 |
| target | ITS |
| texture | 2.0 |
| texture_meth | meth_2.1 |
| ticket | BRLOPS-498 |
| url | https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/12617 |
| utc_date_sampled | 2014-01-23 |
| vegetation_type | Other |
| water_content (%) | 6.831311381 |
| water_content_soil_meth | meth_2.1 |