BASE Amplicons ITS 12621_1 AC988

Blackheath, MiSeq ITS

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Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2015-02-09
Access Control Mode date
Sequence Data Type illumina-amplicons
am_environment Soil
ammonium_nitrogen_wt (mg/kg) 1e-10
ammonium_nitrogen_wt_meth meth_2.1
amplicon ITS
analysis_software_version 2.5.1.3
archive_ingestion_date 2014-11-11
base_amplicon_linkage AC988
base_url https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/its/ramaciotti/BRLOPS-498/
bioplatforms_project Biome of Australia Soil Environments (BASE)
biotic_relationship Free-living
boron_hot_cacl2 (mg/kg) 0.22
boron_hot_cacl2_meth meth_2.1
clay (%) 14.05
clay_meth meth_2.1
coarse_sand (%) 70.33
coarse_sand_meth meth_2.1
collection_date 2014-01-28T00:00:00
color YWBR
comments A04
conductivity (dS/m) 0.015
conductivity_meth meth_2.1
data_generated 2014-11-11
data_type MiSeq ITS
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2014-11-11
depth (m) 0.2
depth_lower (m) 0.3
depth_upper (m) 0.2
description BASE ITS amplicon
dilution neat
dtpa_copper (mg/kg) 0.79
dtpa_copper_meth meth_2.1
dtpa_iron (mg/kg) 61.97
dtpa_iron_meth meth_2.1
dtpa_manganese (mg/kg) 0.45
dtpa_manganese_meth meth_2.1
dtpa_zinc (mg/kg) 0.52
dtpa_zinc_meth meth_2.1
elev (m) 1020.0
env_broad_scale 3 Production from Dryland Agriculture and Plantations
env_local_scale 3.4.1 Tree fruits
env_medium Soil [ENVO_00001998]
exc_aluminium (meq/100g) 0.258
exc_aluminium_meth meth_2.1
exc_calcium (meq/100g) 1.46
exc_calcium_meth meth_2.1
exc_magnesium (meq/100g) 0.22
exc_magnesium_meth meth_2.1
exc_potassium (meq/100g) 0.12
exc_potassium_meth meth_2.1
exc_sodium (meq/100g) 0.02
exc_sodium_meth meth_2.1
facility RAMACIOTTI
facility_code ramaciotti
fine_sand (%) 10.58
fine_sand_meth meth_2.1
flow_cell_id AC988
flow_id AC988
folder_name 20141111_UNSW_BPA_BASE_AC988
general_env_feature Temperate
geo_loc_name Australia:New South Wales [GAZ_00002793]
gravel (%) 5.0
gravel_meth meth_2.1
hyperspectral_analysis DOI 10.5281/zenodo.6265730
hyperspectral_analysis_meth meth_2.26
index ATTGGGCTAGGC
lat_lon (decimal_degrees) -33.652818 150.268179
latitude (decimal_degrees) -33.652818
local_class Kandosol
local_class_meth meth_2.27
longitude (decimal_degrees) 150.268179
ncbi_bioproject_accession PRJNA317932
ncbi_bioproject_accession_number PRJNA317932
ncbi_biosample_accession SAMN04874258
ncbi_biosample_accession_number SAMN04874258
nitrate_nitrogen (mg/kg) 1e-10
nitrate_nitrogen_meth meth_2.1
nucl_acid_ext meth_3.1.1
organic_carbon (%) 0.58
organic_carbon_meth meth_2.1
pcr_1_to_10 P
pcr_1_to_100 F
pcr_neat P
ph 5.0
ph_meth meth_2.1
ph_solid_h2o 5.6
ph_solid_h2o_meth meth_2.1
phosphorus_colwell (mg/kg) 51.0
phosphorus_colwell_meth meth_2.1
potassium_colwell (mg/kg) 45.0
potassium_colwell_meth meth_2.1
read_length 300bp
reads 175192
sample_database_file AM_db_v4.2_202508201559.db
sample_extraction_id 12621_1
sample_id 102.100.100/12621
sample_metadata_ingest_date 2021-04-23 11:13:48
sample_metadata_ingest_file BASE_NEW_CKAN_Curated_depth_xlsx
sample_metadata_update_history soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; AM_visNIR_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx;
sample_name 12621_1_ITS_UNSW_ATTGGGCTAGGC_AC988
sample_site_location_description Blackheath
sample_submission_date 2014-11-11
sample_type Soil
sand (%) 80.91
sand_meth meth_2.1
sequencing_facility UNSW
sequencing_run_number 141107_M01153_0029_000000000-AC988
silt (%) 5.04
silt_meth meth_2.1
slope_gradient (%) 1.0
source_mat_id 102.100.100/12621
store_cond frozen
sulphur (mg/kg) 3.8
sulphur_meth meth_2.1
target ITS
texture 1.5
texture_meth meth_2.1
ticket BRLOPS-498
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/12621
utc_date_sampled 2014-01-28
vegetation_type Other
water_content (%) 5.500683787
water_content_soil_meth meth_2.1