BASE Amplicons ITS 15986_1 AGEDA

bothwell town_reserve, MiSeq ITS

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Map tiles & Data by OpenStreetMap, under CC BY SA.
Resource Permissions organization_member_after_embargo:archive_ingestion_date:90:am-consortium-members
Access Control Date 2015-10-20
Access Control Mode date
Sequence Data Type illumina-amplicons
am_environment Soil
ammonium_nitrogen_wt (mg/kg) 6.0
ammonium_nitrogen_wt_meth meth_2.1
amplicon ITS
analysis_software_version 2.5.1.3
archive_ingestion_date 2015-07-22
base_amplicon_linkage AGEDA
base_url https://downloads-qcif.bioplatforms.com/bpa/base/raw/amplicons/its/ramaciotti/BRLOPS-673/
bioplatforms_project Biome of Australia Soil Environments (BASE)
biotic_relationship Free-living
boron_hot_cacl2 (mg/kg) 0.42
boron_hot_cacl2_meth meth_2.1
clay (%) 22.35
clay_meth meth_2.1
coarse_sand (%) 47.71
coarse_sand_meth meth_2.1
collection_date 2014-11-13T00:00:00
color GRBR
comments 19318_1_ITS_UNSW_ACACTAGATCCG_AGEDA
comments2 15986_1_ITS_UNSW_ACACTAGATCCG_AGEDA
conductivity (dS/m) 0.03
conductivity_meth meth_2.1
data_generated 2015-07-22
data_type MiSeq ITS
database_schema_definitions_url https://github.com/AusMicrobiome/contextualdb_doc/raw/4.2.0/db_schema_definitions/db_schema_definitions.xlsx
date_of_transfer 2015-07-22
depth (m) 0.2
depth_lower (m) 0.3
depth_upper (m) 0.2
description BASE Plate 9
dilution 1:10
dtpa_copper (mg/kg) 1.23
dtpa_copper_meth meth_2.1
dtpa_iron (mg/kg) 112.24
dtpa_iron_meth meth_2.1
dtpa_manganese (mg/kg) 28.37
dtpa_manganese_meth meth_2.1
dtpa_zinc (mg/kg) 0.84
dtpa_zinc_meth meth_2.1
env_medium Soil [ENVO_00001998]
exc_aluminium (meq/100g) 0.076
exc_aluminium_meth meth_2.1
exc_calcium (meq/100g) 3.51
exc_calcium_meth meth_2.1
exc_magnesium (meq/100g) 2.86
exc_magnesium_meth meth_2.1
exc_potassium (meq/100g) 0.22
exc_potassium_meth meth_2.1
exc_sodium (meq/100g) 0.44
exc_sodium_meth meth_2.1
facility RAMACIOTTI
facility_code ramaciotti
fine_sand (%) 21.79
fine_sand_meth meth_2.1
flow_id AGEDA
folder_name 20150722_UNSW_BPA_BASE_ITS_AGEDA
geo_loc_name Australia:Tasmania [GAZ_00007396]
gravel (%) 0.0
gravel_meth meth_2.1
lat_lon (decimal_degrees) -42.38684 147.01602
latitude (decimal_degrees) -42.38684
local_class Sodosol
local_class_meth meth_2.27
longitude (decimal_degrees) 147.01602
ncbi_bioproject_accession PRJNA317932
ncbi_bioproject_accession_number PRJNA317932
ncbi_biosample_accession SAMN07483722
ncbi_biosample_accession_number SAMN07483722
nitrate_nitrogen (mg/kg) 2.0
nitrate_nitrogen_meth meth_2.1
nucl_acid_ext meth_3.1.1
organic_carbon (%) 1.15
organic_carbon_meth meth_2.1
pcr_1_to_10 P
ph 4.8
ph_meth meth_2.1
ph_solid_h2o 6.1
ph_solid_h2o_meth meth_2.1
phosphorus_colwell (mg/kg) 6.0
phosphorus_colwell_meth meth_2.1
potassium_colwell (mg/kg) 88.0
potassium_colwell_meth meth_2.1
read_length 300bp
reads 154187
sample_database_file AM_db_v4.2_202508201559.db
sample_extraction_id 15986_1
sample_id 102.100.100/15986
sample_metadata_ingest_date 2021-04-23 11:13:48
sample_metadata_ingest_file BASE_NEW_CKAN_Curated_depth_xlsx
sample_metadata_update_history soil_types_20210420_xlsx; All_soil_noAntarctic_Methods_FILLED_UPDATE_xlsx; Soil_geo_loc_name_UPDATE2_xlsx; SOIL_local_class_meth_UPDATE_xlsx; AM_add_meth_for_ALL_DB_UPDATE_xlsx;
sample_site_location_description bothwell town_reserve
sample_submission_date 2015-07-22
sample_type Soil
sand (%) 69.5
sand_meth meth_2.1
silt (%) 8.15
silt_meth meth_2.1
source_mat_id 102.100.100/15986
store_cond frozen
sulphur (mg/kg) 2.8
sulphur_meth meth_2.1
target ITS
texture 2.0
texture_meth meth_2.1
ticket BRLOPS-673
url https://data.bioplatforms.com//organization/australian-microbiome?q=sample_id:102.100.100/15986
utc_date_sampled 2014-11-13
water_content (%) 9.008498584
water_content_soil_meth meth_2.1