Dugong, Transcriptome, blood
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
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Data Policy
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Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:cipps003 |
Access Control Date | 2024-04-17 |
Access Control Mode | date |
Sequence Data Type | illumina-transcriptomics |
access_rights | open access |
ala_specimen_url | NA |
analysis_software | Bcl2fastq2 |
analysis_software_version | v2.20 |
ancillary_notes | NA |
barcode_id | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/cipps_staging/illumina-shortread/BPAOPS-1492/20230406_CIPPS_UNSW_H3MCVDSX7/ |
bioplatforms_dataset_id | 102.100.100/419486 |
bioplatforms_library_id | 102.100.100/417507 |
bioplatforms_project | CIPPS |
bioplatforms_project_code | CIPPS_dugong |
bioplatforms_sample_id | 102.100.100/415505 |
cell_postion | n/a |
class | Mammalia |
collection_date | 2022-11-11 |
collector | Janet Lanyon |
common_name | Dugong |
country | Australia |
data_context | Transcriptome |
data_custodian | Carolyn Hogg |
date_of_transfer | 2023-04-18 |
date_of_transfer_to_archive | 2023-04-19 |
dna_treatment | n/a |
facility_project_code | Q0010809 |
facility_sample_id | BAT11852A23 |
family | Dugongidae |
file_type | fastq.gz |
flowcell_id | H3MCVDSX7 |
flowcell_type | NovaSeq S4 |
genotypic_sex | not determined |
genus | Dugonginae |
insert_size_range | 150 PE |
institution_name | The University of Sydney |
library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
library_id | 417507 |
library_index_id_dual | UDP0311 |
library_index_seq_dual | TTCTCGTGCA-ATACACAGAG |
library_layout | paired end |
library_location | Ramaciotti Centre for Genomics |
library_ng_ul | 12.6 |
library_pcr_cycles | 13 |
library_pcr_reps | 1 |
library_prep_date | 2023-04-19 |
library_prepared_by | Ramaciotti Centre for Genomics |
library_selection | PolyA |
library_source | TRANSCRIPTOMIC |
library_strategy | RNA-Seq |
library_type | Illumina-transcriptomics |
location_text | Moreton Bay, QLD |
material_conc_ng_ul | 13.0 |
material_extracted_by | Kimberley Batley |
material_extraction_date | 2023-02-08 |
material_extraction_method | Rneasy protect animal blood kit |
material_extraction_type | RNA |
metadata_revision_date | 2023-10-19 |
metadata_revision_filename | 20231019_CIPPS_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
movie_length | n/a |
n_libraries_pooled | 23.0 |
order | Sirenia |
phenotypic_sex | Male |
phylum | Chordata |
prior_genetics | NA |
sample_custodian | Carolyn Hogg |
sample_quality | High |
sample_type | Tissue sample |
scientific_name | Dugong dugon |
scientific_name_authorship | NA |
scientific_name_note | NA |
sequencing_facility | Ramaciotti Centre for Genomics |
sequencing_kit_chemistry_version | NovaSeq v1.5 |
sequencing_model | Illumina NovaSeq 6000 |
sequencing_platform | ILLUMINA |
species | dugon |
specimen_id | M_MB22260 |
specimen_id_description | Sample number - UQ |
state_or_region | Queensland |
subspecies | NA |
taxon_id | 29137.0 |
taxonomic_group | Mammal |
ticket | BPAOPS-1492 |
tissue_collection | The University of Sydney |
tissue_collection_type | University |
tissue_number | MB22260_blood |
tissue_preservation | RNA protect |
tissue_preservation_temperature | -80.0 |
tissue_type | blood |
wild_captive | wild |
work_order | 10809 |