Tasmanian devil, Transcriptome, Mammary gland
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Data and Resources
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:cipps002 |
| Access Control Date | 2024-10-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-transcriptomics |
| access_rights | open access |
| ala_specimen_url | NA |
| analysis_software | BCLConvert |
| analysis_software_version | 4.1.7 |
| ancillary_notes | NA |
| associated_media | NA |
| barcode_id | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/cipps_staging/illumina-shortread/BPAOPS-1489/20230929_CIPPS_UNSW_22C5YVLT3/ |
| bioplatforms_dataset_id | 102.100.100/358842 |
| bioplatforms_library_id | 102.100.100/462460 |
| bioplatforms_project | CIPPS |
| bioplatforms_project_code | CIPPS_devil |
| bioplatforms_sample_id | 102.100.100/460418 |
| class | Mammalia |
| collection_date | 2023-05-31 |
| collection_method | Dissection |
| collector | Ruth Pye |
| common_name | Tasmanian devil |
| country | Australia |
| data_context | Transcriptome |
| data_custodian | Carolyn Hogg |
| date_of_transfer | 2023-10-09 |
| date_of_transfer_to_archive | 2023-10-09 |
| death_date | 2023-05-31 |
| decimal_latitude_public | -42.7870211854 |
| decimal_longitude_public | 147.1190766547 |
| facility_project_code | Q0011702 |
| facility_sample_id | PEE12354A6 |
| family | Dasyuridae |
| file_type | fastq.gz |
| flowcell_id | 22C5YVLT3 |
| flowcell_type | NovaSeq X 10B |
| genotypic_sex | not determined |
| genus | Sarcophilus |
| health_state | euthanised due to DFTD |
| insert_size_range | 153 PE |
| institution_name | The University of Sydney |
| latitude | -42.7870211854 |
| library_construction_protocol | Illumina Stranded mRNA Prep Ligation |
| library_id | 462460 |
| library_index_id_dual | UDP0013 |
| library_index_seq_dual | CTTGCCATTA-CCTTCGTGAT |
| library_layout | paired end |
| library_location | Ramaciotti Centre for Genomics |
| library_ng_ul | 0.3635034452 |
| library_pcr_cycles | 11 |
| library_pcr_reps | 1 |
| library_prep_date | 2023-08-21 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_selection | Oligo-dT |
| library_source | TRANSCRIPTOMIC |
| library_strategy | RNA-Seq |
| library_type | Illumina-transcriptomics |
| lifestage | adult |
| longitude | 147.1190766547 |
| material_conc_ng_ul | 40.0 |
| material_extracted_by | Emma Peel |
| material_extraction_date | 2023-06-13 |
| material_extraction_method | Qiagen Rneasy tissue kit |
| material_extraction_type | RNA |
| metadata_revision_date | 2023-10-19 |
| metadata_revision_filename | 20231019_CIPPS_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | dissection |
| n_libraries_pooled | 25.0 |
| order | Dasyuromorphia |
| phenotypic_sex | female |
| phylum | Chordata |
| prior_genetics | NA |
| sample_custodian | Carolyn Hogg |
| sample_quality | Sample collected 24hrs after death |
| sample_type | Tissue sample |
| scientific_name | Sacrophilus harrisii |
| scientific_name_authorship | NA |
| scientific_name_note | NA |
| sequencing_facility | Ramaciotti Centre for Genomics |
| sequencing_kit_chemistry_version | NovaSeq X v1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| sex_certainty | high |
| source_population | Malbina |
| species | harrisii |
| specimen_id | TD639_devil |
| specimen_id_description | Wild lactating female devil TD639 with DFTD |
| state_or_region | Tasmania |
| subspecies | NA |
| taxon_id | 9305.0 |
| taxonomic_group | Mammal |
| ticket | BPAOPS-1489 |
| tissue_collection | Australasian Wildlife Genomics Group |
| tissue_collection_type | University |
| tissue_number | Devil_lactating_mammary_gland |
| tissue_preservation | RNAlater |
| tissue_preservation_temperature | -80.0 |
| tissue_type | Mammary gland |
| wild_captive | wild |
| work_order | 14055 |