Jackass Morwong (Australia) or tarakihi (New Zealand), Reference genome, Illumina-HiC, gill
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This dataset is currently under a short embargo period until August 21, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2026-08-21 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| altitude | NA |
| analysis_software | 4.1.23 |
| ancillary_notes | NA |
| associated_media | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/genomics-hi-c/BPAOPS-1878/20250821-232YL2LT3-WO26009-WO27004/20250821_FISH_BRF_618586_232YL2LT3/ |
| bioplatforms_dataset_id | 102.100.100/618586 |
| bioplatforms_library_id | 102.100.100/616586 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614586 |
| ccg_jira_ticket | BPAOPS-1878 |
| class | Actinopterygii |
| collection_date | 2023-07-22 |
| collection_method | McKenna Trawl |
| collection_permit | AFMA scientific Permit - 1005949; Animal Ethics Permit 2022-28; Access to Biological Resources in a Commonwealth Area for Non-Commercial Purposes AU-COM2023-582 |
| collector | Cindy Bessey |
| common_name | Jackass Morwong (Australia) or tarakihi (New Zealand) |
| country | Australia |
| data_context | Reference genome |
| data_type | Illumina-HiC |
| date_of_transfer | 2025-08-21 |
| date_of_transfer_to_archive | 2025-08-25 |
| death_date | 2023-07-22 |
| decimal_latitude_public | -38.228014 |
| decimal_longitude_public | 149.309334 |
| depth | 344 |
| dna_treatment | FA crosslinking |
| env_broad_scale | ocean biome |
| env_local_scale | ocean biome |
| env_medium | seawater |
| facility_project_code | NA |
| facility_sample_id | 616586_FISH_BRF_232YL2LT3_CAAGTTAC-TATTCCTG |
| family | Cheilodactylidae |
| flowcell_id | 232YL2LT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250821-232YL2LT3-WO26009-WO27004 |
| genotypic_sex | not determined |
| genus | Nemadactylus |
| habitat | seawater |
| health_state | fish appeared in excellent condition |
| identified_by | John Pogonoski |
| indigenous_location | Palawa |
| insert_size_range | ~600bp |
| latitude | -38.228014 |
| library_construction_protocol | HiC Arima 2.0 |
| library_id | 616586 |
| library_index_id | Arima_46_F06 |
| library_index_id_dual | Arima_46_F06 |
| library_index_seq | CAAGTTAC |
| library_index_seq_dual | TATTCCTG |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATcaagttacCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACtattcctgTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction digest |
| library_source | GENOMIC |
| library_strategy | HiC |
| library_type | Illumina-HiC |
| lifestage | adult organism |
| location_info_restricted | NO |
| location_text | SeaMES sample |
| longitude | 149.309334 |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | not determined |
| n_libraries_pooled | 1 |
| order | Centrarchiformes |
| phenotypic_sex | not determined |
| phylum | Chordata |
| project_lead | Sharon Hook |
| sample_collection_type | SeaMes voyage |
| sample_custodian | Sharon Hook, Leon Court |
| sample_id | 1639_D_1_5 |
| sample_id_description | SeaMes Internal database |
| sample_quality | Excellent |
| sample_type | gill tissue sample |
| scientific_name | Nemadactylus macropterus |
| scientific_name_authorship | (Forster, 1801) |
| scientific_name_note | NA |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | DRAGEN BCLConvert |
| sequencing_model | NovaSeq X |
| sequencing_platform | Illumina |
| sex_certainty | not determined |
| source_population | Tasmania |
| species | macropterus |
| specimen_custodian | CSIRO Environment |
| state_or_region | Tasmania |
| sub_species | NA |
| taxon_id | 76931 |
| taxonomic_group | fish |
| temperature | NA |
| ticket | BPAOPS-1878 |
| tissue | gill |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| type_status | NA |
| wild_captive | wild |
| work_order | 27004 |