Red handfish, Reference genome, Illumina-HiC, Whole body
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This dataset is currently under a short embargo period until August 21, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2026-08-21 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| analysis_software | 4.1.23 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/genomics-hi-c/BPAOPS-1878/20250821-232YL2LT3-WO26009-WO27004/20250821_FISH_BRF_618588_232YL2LT3/ |
| bioplatforms_dataset_id | 102.100.100/618588 |
| bioplatforms_library_id | 102.100.100/616588 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614588 |
| birth_date | 2024-12-05 |
| ccg_jira_ticket | BPAOPS-1878 |
| class | Actinopterygii |
| collection_date | 2025-04-04 |
| collection_method | Hand |
| collection_permit | NA - opportunistic collection of naturally deceased individual |
| collector | IMAS |
| collector_sample_id | 24-3:75 (75) |
| common_name | Red handfish |
| country | Australia |
| data_context | Reference genome |
| data_type | Illumina-HiC |
| date_of_transfer | 2025-08-21 |
| date_of_transfer_to_archive | 2025-08-25 |
| death_date | 2025-04-04 |
| dna_treatment | FA crosslinking |
| env_broad_scale | marine biome [ENVO_00000447] |
| env_local_scale | ocean biome [ENVO_01000048] |
| env_medium | seawater [ENVO_01001964] |
| facility_project_code | NA |
| facility_sample_id | 616588_FISH_BRF_232YL2LT3_CTTGCATA-GCACACAT |
| family | Brachionichthyidae |
| flowcell_id | 232YL2LT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250821-232YL2LT3-WO26009-WO27004 |
| genotypic_sex | not determined |
| genus | Thymichthys |
| habitat | Aquaria |
| health_state | Dead |
| identified_by | IMAS |
| insert_size_range | ~600bp |
| library_construction_protocol | HiC |
| library_id | 616588 |
| library_index_id | Arima_20_D03 |
| library_index_id_dual | Arima_20_D03 |
| library_index_seq | CTTGCATA |
| library_index_seq_dual | GCACACAT |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATcttgcataCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACgcacacatTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction digest |
| library_source | GENOMIC |
| library_type | Illumina-HiC |
| lifestage | Juvenile |
| location_info_restricted | Yes |
| location_text | 15-21 Nubeena Cres, Taroona TAS 7053 |
| material_extraction_type | NA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | not determined |
| n_libraries_pooled | 1 |
| order | Lophiiformes |
| phenotypic_sex | not determined |
| phylum | Chordata |
| project_collaborators | Elspeth McLennan |
| project_lead | Carolyn Hogg |
| sample_collection_type | Dissection |
| sample_custodian | Carolyn Hogg |
| sample_id | 24-3:75 (75) |
| sample_id_description | IMAS ID |
| sample_quality | Medium |
| sample_type | Tail |
| scientific_name | Thymichthys politus |
| scientific_name_authorship | Richardson |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | DRAGEN BCLConvert |
| sequencing_model | HiC Arima 2.0 |
| sequencing_platform | NovaSeq X |
| source_population | Captive population |
| species | politus |
| specimen_custodian | Carolyn Hogg |
| specimen_id | 24-3:75 (75) |
| specimen_id_description | IMAS ID |
| state_or_region | Tasmania |
| taxonomic_group | Fish |
| temperature | 16.0 |
| ticket | BPAOPS-1878 |
| tissue | Whole body |
| tissue_preservation | Flash frozen |
| tissue_preservation_temperature | -80.0 |
| wild_captive | Captive |
| work_order | 27004 |