Bony Herring, Reference genome, Illumina-HiC, blood
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This dataset is currently under a short embargo period until August 20, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2026-08-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| analysis_software | 4.1.23 |
| ancillary_notes | NA |
| associated_media | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/genomics-hi-c/BPAOPS-1875/20250820-232K7NLT3-WO27005-WO14101/20250820_FISH_BRF_618616_232K7NLT3/ |
| bioplatforms_dataset_id | 102.100.100/618616 |
| bioplatforms_library_id | 102.100.100/616630 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614625 |
| ccg_jira_ticket | BPAOPS-1875 |
| class | Actinopterygii |
| collection_date | 2025-05-01 |
| collection_method | Fyke Net |
| collection_permit | AEC 202414067 |
| collector | Adam Kerezsy, Peter Unmack, Matthew Campbell |
| collector_sample_id | PU25-08 |
| common_name | Bony Herring |
| country | Australia |
| data_context | Reference genome |
| data_type | Illumina-HiC |
| date_of_transfer | 2025-08-20 |
| date_of_transfer_to_archive | 2025-08-25 |
| death_date | 2025-05-01 |
| decimal_latitude_public | -33.267331 |
| decimal_longitude_public | 146.429632 |
| dna_treatment | FA crosslinking |
| env_broad_scale | freshwater biome [ENVO_00000873] |
| env_local_scale | freshwater lake biome [ENVO_01000252] |
| env_medium | river water [ENVO_01000599] |
| facility_project_code | NA |
| facility_sample_id | 616630_FISH_BRF_232K7NLT3_GACTTGAC-GCATCATA |
| family | Clupeidae |
| flowcell_id | 232K7NLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250820-232K7NLT3-WO27005-WO14101 |
| genotypic_sex | not determined |
| genus | Nematalosa |
| health_state | healthy |
| identified_by | Peter Unmack |
| insert_size_range | ~600bp |
| latitude | -33.267331 |
| library_construction_protocol | HiC Arima 2.0 |
| library_id | 616630 |
| library_index_id | Arima_13_E02 |
| library_index_id_dual | Arima_13_E02 |
| library_index_seq | GACTTGAC |
| library_index_seq_dual | GCATCATA |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgacttgacCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACgcatcataTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction digest |
| library_source | GENOMIC |
| library_strategy | HiC |
| library_type | Illumina-HiC |
| lifestage | adult |
| location_info_restricted | no |
| location_text | Lake Cargelligo by where Curlew Water drains into the lake at Adam Kerezsy's house |
| longitude | 146.429632 |
| material_extracted_by | ANU-BRF |
| material_extraction_date | 2025-06-23 |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | dissection |
| n_libraries_pooled | 1 |
| order | Clupeiformes |
| phenotypic_sex | female |
| phylum | Chordata |
| project_collaborators | Peter Unmack |
| project_lead | Matthew Mac Campbell |
| sample_collection_type | University |
| sample_custodian | Peter Unmack, Matthew Campbell |
| sample_id | NE2508.G1_fin |
| sample_id_description | Peter Unmack field code |
| sample_quality | high |
| sample_type | tissue sample |
| scientific_name | Nematalosa erebi |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | DRAGEN BCLConvert |
| sequencing_model | NovaSeq X |
| sequencing_platform | Illumina |
| sex_certainty | 1.0 |
| species | erebi |
| specimen_custodian | Peter Unmack, Matthew Campbell |
| specimen_id | NE2508.G1 |
| specimen_id_description | Peter Unmack field code |
| state_or_region | NSW |
| taxon_id | 316163 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1875 |
| tissue | blood |
| tissue_preservation | Nitrogen |
| tissue_preservation_temperature | -196.0 |
| wild_captive | wild |
| work_order | 27005 |