Pacific Blue Eye, Reference genome, Illumina-HiC, fin
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This dataset is currently under a short embargo period until August 20, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2026-08-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| analysis_software | 4.1.23 |
| ancillary_notes | NA |
| associated_media | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/genomics-hi-c/BPAOPS-1875/20250820-232K7NLT3-WO27005-WO14101/20250820_FISH_BRF_618626_232K7NLT3/ |
| bioplatforms_dataset_id | 102.100.100/618626 |
| bioplatforms_library_id | 102.100.100/616640 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614635 |
| ccg_jira_ticket | BPAOPS-1875 |
| class | Actinopterygii |
| collection_date | 2024-09-26 |
| collection_method | Seine net |
| collection_permit | AEC 202414067 |
| collector | Peter Unmack, Matthew McGee |
| collector_sample_id | PU24-23 |
| common_name | Pacific Blue Eye |
| country | Australia |
| data_context | Reference genome |
| data_type | Illumina-HiC |
| date_of_transfer | 2025-08-20 |
| date_of_transfer_to_archive | 2025-08-25 |
| death_date | 2025-06-23 |
| decimal_latitude_public | -21.1632415545 |
| decimal_longitude_public | 149.1872618635 |
| dna_treatment | FA crosslinking |
| env_broad_scale | marine biome [ENVO_00000447] |
| env_local_scale | estuarine biome [ENVO_01000020] |
| env_medium | ?? |
| facility_project_code | NA |
| facility_sample_id | 616640_FISH_BRF_232K7NLT3_GCATCATA-ATGTCAAG |
| family | Pseudomugilidae |
| flowcell_id | 232K7NLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250820-232K7NLT3-WO27005-WO14101 |
| genotypic_sex | not determined |
| genus | Pseudomugil |
| health_state | healthy |
| identified_by | Peter Unmack |
| insert_size_range | ~600bp |
| latitude | -21.1632415545 |
| library_construction_protocol | HiC Arima 2.0 |
| library_id | 616640 |
| library_index_id | Arima_12_D02 |
| library_index_id_dual | Arima_12_D02 |
| library_index_seq | GCATCATA |
| library_index_seq_dual | ATGTCAAG |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgcatcataCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACatgtcaagTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction digest |
| library_source | GENOMIC |
| library_strategy | HiC |
| library_type | Illumina-HiC |
| lifestage | adult |
| location_info_restricted | no |
| location_text | drain on north side of Mackay airport, off Bridge Road just above where the drain turns south |
| longitude | 149.1872618635 |
| material_extracted_by | ANU-BRF |
| material_extraction_date | 2025-06-23 |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | obvious from external characters |
| n_libraries_pooled | 1 |
| order | Ovalentaria |
| phenotypic_sex | male |
| phylum | Chordata |
| project_lead | Peter Unmack |
| sample_collection_type | University |
| sample_custodian | Peter Unmack, Matthew McGee |
| sample_id | PS2423.G1_fin |
| sample_id_description | Peter Unmack field code |
| sample_quality | high |
| sample_type | tissue sample |
| scientific_name | Pseudomugil signifer |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | DRAGEN BCLConvert |
| sequencing_model | NovaSeq X |
| sequencing_platform | Illumina |
| sex_certainty | 1.0 |
| species | signifer |
| specimen_custodian | Peter Unmack, Matthew McGee |
| specimen_id | PS2423.G1 |
| specimen_id_description | Peter Unmack field code |
| state_or_region | QLD |
| taxon_id | 160495 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1875 |
| tissue | fin |
| tissue_preservation | Nitrogen |
| tissue_preservation_temperature | -196.0 |
| wild_captive | wild |
| work_order | 27005 |