Elizabeth Springs Goby, Reference genome, Illumina-HiC, fin
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This dataset is currently under a short embargo period until August 20, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2026-08-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| analysis_software | 4.1.23 |
| ancillary_notes | NA |
| associated_media | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/genomics-hi-c/BPAOPS-1875/20250820-232K7NLT3-WO27005-WO14101/20250820_FISH_BRF_618629_232K7NLT3/ |
| bioplatforms_dataset_id | 102.100.100/618629 |
| bioplatforms_library_id | 102.100.100/616643 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614638 |
| ccg_jira_ticket | BPAOPS-1875 |
| class | Actinopterygii |
| collection_date | 2024-10-28 |
| collection_method | Dip Net |
| collection_permit | AEC 202414067 |
| collector | Peter Unmack, Rob Wager, Phil Maiden, Jenny Bowles |
| collector_sample_id | PU24-44 |
| common_name | Elizabeth Springs Goby |
| country | Australia |
| data_context | Reference genome |
| data_type | Illumina-HiC |
| date_of_transfer | 2025-08-20 |
| date_of_transfer_to_archive | 2025-08-25 |
| death_date | 2025-06-23 |
| decimal_latitude_public | -23.343785 |
| decimal_longitude_public | 140.584233 |
| dna_treatment | FA crosslinking |
| env_broad_scale | freshwater biome [ENVO_00000873] |
| env_local_scale | freshwater river biome [ENVO_01000253] |
| env_medium | river water [ENVO_01000599] |
| facility_project_code | NA |
| facility_sample_id | 616643_FISH_BRF_232K7NLT3_ATGTCAAG-TAGAGCTC |
| family | Gobiiformes |
| flowcell_id | 232K7NLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250820-232K7NLT3-WO27005-WO14101 |
| genotypic_sex | not determined |
| genus | Chlamydogobius |
| health_state | healthy |
| identified_by | Peter Unmack |
| insert_size_range | ~600bp |
| latitude | -23.343785 |
| library_construction_protocol | HiC Arima 2.0 |
| library_id | 616643 |
| library_index_id | Arima_11_C02 |
| library_index_id_dual | Arima_11_C02 |
| library_index_seq | ATGTCAAG |
| library_index_seq_dual | TAGAGCTC |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATatgtcaagCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACtagagctcTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction digest |
| library_source | GENOMIC |
| library_strategy | HiC |
| library_type | Illumina-HiC |
| lifestage | adult |
| location_info_restricted | no |
| location_text | Elizabeth Springs, "Creek Spring" |
| longitude | 140.584233 |
| material_extracted_by | ANU-BRF |
| material_extraction_date | 2025-06-23 |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | obvious from external characters |
| n_libraries_pooled | 1 |
| order | Ovalentaria |
| phenotypic_sex | male |
| phylum | Chordata |
| project_collaborators | Peter Unmack, Matthew McGee |
| project_lead | Dean Gilligan |
| sample_collection_type | University |
| sample_custodian | Peter Unmack, Matthew McGee |
| sample_id | CM2444.G1_fin |
| sample_id_description | Peter Unmack field code |
| sample_quality | high |
| sample_type | tissue sample |
| scientific_name | Chlamydogobius micropterus |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | DRAGEN BCLConvert |
| sequencing_model | NovaSeq X |
| sequencing_platform | Illumina |
| sex_certainty | 1.0 |
| species | micropterus |
| specimen_custodian | Peter Unmack, Matthew McGee |
| specimen_id | CM2444.G1 |
| specimen_id_description | Peter Unmack field code |
| state_or_region | QLD |
| taxon_id | 1527627 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1875 |
| tissue | fin |
| tissue_preservation | Nitrogen |
| tissue_preservation_temperature | -196.0 |
| wild_captive | wild |
| work_order | 27005 |