Southern Pygmy Perch, Reference genome, Illumina-HiC, gills
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until August 20, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2026-08-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| altitude | 2.0 |
| analysis_software | 4.1.23 |
| ancillary_notes | NA |
| associated_media | BPASPP03.jpg |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/genomics-hi-c/BPAOPS-1875/20250820-232K7NLT3-WO27005-WO14101/20250820_FISH_BRF_618637_232K7NLT3/ |
| bioplatforms_dataset_id | 102.100.100/618637 |
| bioplatforms_library_id | 102.100.100/616704 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614699 |
| ccg_jira_ticket | BPAOPS-1875 |
| class | Actinopterygii |
| collection_date | 2025-05-01 |
| collection_method | fyke nets |
| collector | Sylvia Zukowski |
| collector_sample_id | NA |
| common_name | Southern Pygmy Perch |
| country | Australia |
| data_context | Reference genome |
| data_type | Illumina-HiC |
| date_of_transfer | 2025-08-20 |
| date_of_transfer_to_archive | 2025-08-25 |
| death_date | 2025-07-01 |
| depth | unknown |
| dna_treatment | FA crosslinking |
| env_broad_scale | freshwater biome [ENVO_00000873] |
| env_local_scale | small river biome [ENVO_00000890] |
| facility_project_code | NA |
| facility_sample_id | 616704_FISH_BRF_232K7NLT3_GCACCTAA-ATCCTCTT |
| family | Percichthyidae |
| flowcell_id | 232K7NLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250820-232K7NLT3-WO27005-WO14101 |
| genotypic_sex | unknown |
| genus | Nannoperca |
| habitat | Wetlands |
| health_state | good |
| identified_by | Sylvia Zukowski |
| indigenous_location | Kumerangk |
| insert_size_range | ~600bp |
| library_construction_protocol | HiC Arima 2.0 |
| library_id | 616704 |
| library_index_id | Arima_22_F03 |
| library_index_id_dual | Arima_22_F03 |
| library_index_seq | GCACCTAA |
| library_index_seq_dual | ATCCTCTT |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATgcacctaaCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACatcctcttTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction digest |
| library_source | GENOMIC |
| library_strategy | HiC |
| library_type | Illumina-HiC |
| lifestage | adult |
| location_info_restricted | yes |
| location_text | Hindmarsh Island |
| material_extracted_by | ANU-BRF |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | disection |
| n_libraries_pooled | 1 |
| order | Centrarchiformes |
| phenotypic_sex | male |
| phylum | Chordata |
| project_lead | Jonathan Sandoval |
| sample_collection_type | University |
| sample_custodian | Luciano Beheregaray |
| sample_id | BPASPP03_Gills01 |
| sample_id_description | Project + commun name + Tissue |
| sample_quality | excellent |
| sample_type | Tissue |
| scientific_name | Nannoperca australis |
| scientific_name_authorship | Günther, 1861 |
| scientific_name_note | NA |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | DRAGEN BCLConvert |
| sequencing_model | NovaSeq X |
| sequencing_platform | Illumina |
| sex_certainty | certain |
| source_population | NA |
| species | australis |
| specimen_custodian | Flinders University |
| specimen_id | BPASPP03 |
| specimen_id_description | MELFU |
| state_or_region | South Australia |
| sub_species | NA |
| taxon_id | 135770 |
| taxonomic_group | fish |
| temperature | unknown |
| ticket | BPAOPS-1875 |
| tissue | gills |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| type_status | no |
| wild_captive | wild (captive since 2024) |
| work_order | 27005 |