Lake Eacham Rainbowfish, Reference genome, Illumina-HiC, gills
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This dataset is currently under a short embargo period until August 20, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2026-08-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| altitude | 735.0 |
| analysis_software | 4.1.23 |
| ancillary_notes | NA |
| associated_media | BPAMEA03.jpg |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/genomics-hi-c/BPAOPS-1875/20250820-232K7NLT3-WO27005-WO14101/20250820_FISH_BRF_618643_232K7NLT3/ |
| bioplatforms_dataset_id | 102.100.100/618643 |
| bioplatforms_library_id | 102.100.100/616714 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614709 |
| ccg_jira_ticket | BPAOPS-1875 |
| class | Actinopterygii |
| collection_date | 2023-11-02 |
| collection_method | seine nets |
| collector | Peter Unmack |
| collector_sample_id | NA |
| common_name | Lake Eacham Rainbowfish |
| country | Australia |
| data_context | Reference genome |
| data_type | Illumina-HiC |
| date_of_transfer | 2025-08-20 |
| date_of_transfer_to_archive | 2025-08-25 |
| death_date | 2025-07-01 |
| depth | unknown |
| dna_treatment | FA crosslinking |
| env_broad_scale | freshwater biome [ENVO_00000873] |
| env_local_scale | small river biome [ENVO_00000890] |
| facility_project_code | NA |
| facility_sample_id | 616714_FISH_BRF_232K7NLT3_TGGCACCA-TGCTGCTC |
| family | Melanotaeniidae |
| flowcell_id | 232K7NLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250820-232K7NLT3-WO27005-WO14101 |
| genotypic_sex | unknown |
| genus | Melanotaenia |
| habitat | Rainforest |
| health_state | good |
| identified_by | Peter Unmack |
| indigenous_location | Wajan Yabanday |
| insert_size_range | ~600bp |
| library_construction_protocol | HiC Arima 2.0 |
| library_id | 616714 |
| library_index_id | Arima_24_H03 |
| library_index_id_dual | Arima_24_H03 |
| library_index_seq | TGGCACCA |
| library_index_seq_dual | TGCTGCTC |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 1.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATtggcaccaCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACtgctgctcTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 8 |
| library_pcr_reps | 1 |
| library_prepared_by | Max Nekrasov |
| library_selection | Restriction digest |
| library_source | GENOMIC |
| library_strategy | HiC |
| library_type | Illumina-HiC |
| lifestage | adult |
| location_info_restricted | yes |
| location_text | Maalan River |
| material_extracted_by | ANU-BRF |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | disection |
| n_libraries_pooled | 1 |
| order | Atheriniformes |
| phenotypic_sex | male |
| phylum | Chordata |
| project_lead | Luciano Beheregaray |
| sample_collection_type | University |
| sample_custodian | Luciano Beheregaray |
| sample_id | BPAMEA03_Gills01 |
| sample_id_description | Project + commun name + Tissue |
| sample_quality | excellent |
| sample_type | Tissue |
| scientific_name | Melanotaenia eachamensis |
| scientific_name_authorship | Allen & Cross, 1982 |
| scientific_name_note | NA |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | DRAGEN BCLConvert |
| sequencing_model | NovaSeq X |
| sequencing_platform | Illumina |
| sex_certainty | certain |
| source_population | NA |
| species | eachamensis |
| specimen_custodian | Flinders University |
| specimen_id | BPAMEA03 |
| specimen_id_description | MELFU |
| state_or_region | Queensland |
| sub_species | NA |
| taxon_id | 120845 |
| taxonomic_group | fish |
| temperature | unknown |
| ticket | BPAOPS-1875 |
| tissue | gills |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| type_status | no |
| wild_captive | wild (captive since 2023) |
| work_order | 27005 |