Red handfish, Population genomics, Illumina-shortread, Fin clip
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This dataset is currently under a short embargo period until July 16, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2026-07-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | BCLConvert |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/illumina-shortread/BPAOPS-1828/20250711_FISH_UNSW_233HYTLT3/ |
| bioplatforms_dataset_id | 102.100.100/618589 |
| bioplatforms_library_id | 102.100.100/616595 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614595 |
| birth_date | 2021-11-15 |
| ccg_jira_ticket | BPAOPS-1828 |
| class | Actinopterygii |
| collection_date | 2024-09-25 |
| collection_method | Scissors |
| collection_permit | NA - opportunistic collection of naturally deceased individual |
| collector | IMAS |
| collector_sample_id | 21-2:F17 (64) |
| common_name | Red handfish |
| country | Australia |
| data_context | Population genomics |
| data_generated | true |
| data_type | Illumina-shortread |
| date_of_transfer | 2025-07-16 |
| date_of_transfer_to_archive | 2025-07-17 |
| death_date | 2024-09-25 |
| env_broad_scale | marine biome [ENVO_00000447] |
| env_local_scale | ocean biome [ENVO_01000048] |
| env_medium | seawater [ENVO_01001964] |
| facility_project_code | Q0017467 |
| facility_sample_id | SIL15667A7 |
| family | Brachionichthyidae |
| flow_cell_id | 233HYTLT3 |
| flowcell_id | 233HYTLT3 |
| flowcell_type | NovaSeq X 10B |
| folder_name | 20250711_FISH_UNSW_233HYTLT3 |
| genotypic_sex | Unknown |
| genus | Thymichthys |
| habitat | Aquaria |
| health_state | Dead |
| identified_by | IMAS |
| insert_size_range | 150bp PE |
| library_construction_protocol | Illumina DNA PCR Free Prep |
| library_id | 616595 |
| library_index_id | UDP0175 |
| library_index_seq_dual | GGACCAGTGG-CGCGAGCCTA |
| library_ng_ul | 0.609 |
| library_pcr_cycles | N/A |
| library_pcr_reps | N/A |
| library_prep_date | 2025-06-26 |
| library_prepared_by | Ramaciotti Centre for Genomics |
| library_source | GENOMIC |
| library_strategy | WGS |
| library_type | Illumina-shortread |
| lifestage | Sub-adult |
| location_info_restricted | Yes |
| location_text | 15-21 Nubeena Cres, Taroona TAS 7053 |
| material_conc_ng_ul | 33.4 |
| material_extracted_by | Elspeth McLennan |
| material_extraction_date | 2025-05-26 |
| material_extraction_method | MagAttract |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | Visual |
| n_libraries_pooled | 15.0 |
| order | Lophiiformes |
| phenotypic_sex | Female |
| phylum | Chordata |
| project_collaborators | Elspeth McLennan |
| project_lead | Carolyn Hogg |
| sample_collection_type | Dissection |
| sample_custodian | Carolyn Hogg |
| sample_id | 2021-2.2 |
| sample_id_description | Cohort of the fish |
| sample_quality | Medium |
| sample_type | Fin clip |
| scientific_name | Thymichthys politus |
| scientific_name_authorship | Richardson |
| sequencing_facility | Ramaciotti |
| sequencing_kit_chemistry_version | version 1.0 |
| sequencing_model | Illumina NovaSeq X Plus |
| sequencing_platform | ILLUMINA |
| source_population | Captive population |
| species | politus |
| specimen_custodian | Carolyn Hogg |
| specimen_id | 2021-2.2 |
| specimen_id_description | Cohort of the fish |
| state_or_region | Tasmania |
| taxonomic_group | Fish |
| temperature | 10.9 |
| ticket | BPAOPS-1828 |
| tissue | Fin clip |
| tissue_preservation | 100% EtOH |
| tissue_preservation_temperature | -20.0 |
| wild_captive | Captive |
| work_order | 27003 |