Bony Herring, Reference genome, PacBio-HiFi, blood
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This dataset is currently under a short embargo period until July 21, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member |
| Access Control Date | 2026-07-21 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink 25.1.0.257715 |
| ancillary_notes | NA |
| associated_media | NA |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/pacbio-hifi/BPAOPS-1842/20250714_FISH_BRF_m84118_250714_235739_s2/ |
| bioplatforms_dataset_id | 102.100.100/618590 |
| bioplatforms_library_id | 102.100.100/616604 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614604 |
| ccg_jira_ticket | BPAOPS-1842 |
| cell_postion | 1_A01 |
| class | Actinopterygii |
| collection_date | 2025-05-01 |
| collection_method | Fyke Net |
| collection_permit | AEC 202414067 |
| collector | Adam Kerezsy, Peter Unmack, Matthew Campbell |
| collector_sample_id | PU25-08 |
| common_name | Bony Herring |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-07-21 |
| date_of_transfer_to_archive | 2025-07-21 |
| death_date | 2025-05-01 |
| decimal_latitude_public | -33.267331 |
| decimal_longitude_public | 146.429632 |
| dna_treatment | blue pippin size selection of pooled libraries |
| env_broad_scale | freshwater biome [ENVO_00000873] |
| env_local_scale | freshwater lake biome [ENVO_01000252] |
| env_medium | river water [ENVO_01000599] |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | PacBio_WGS53_969 |
| facility_sample_id | 969-2 |
| family | Clupeidae |
| fast5_compression | bam |
| flowcell_id | m84118_250714_235739_s2 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250714_FISH_BRF_m84118_250714_235739_s2 |
| genotypic_sex | not determined |
| genus | Nematalosa |
| health_state | healthy |
| identified_by | Peter Unmack |
| insert_size_range | 14355.0 |
| latitude | -33.267331 |
| library_comments | Shearing with Microlab Prep |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_index_id_dual | bc2070 |
| library_index_seq_dual | TACTGCTCACGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 98.4 |
| library_prep_date | 2025-07-08 |
| library_prepared_by | Xiangning Liu |
| library_selection | DNA shearing |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_info_restricted | no |
| location_text | Lake Cargelligo by where Curlew Water drains into the lake at Adam Kerezsy's house |
| longitude | 146.429632 |
| material_conc_ng_ul | 204.0 |
| material_extracted_by | Matthew McGee, Peter_Unmack |
| material_extraction_date | 2025-06-23 |
| material_extraction_method | PacBio Nanobind PanDNA kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | dissection |
| movie_length | 30.0 |
| n_libraries_pooled | 4.0 |
| order | Clupeiformes |
| phenotypic_sex | female |
| phylum | Chordata |
| project_collaborators | Peter Unmack |
| project_lead | Matthew Mac Campbell |
| sample_collection_type | University |
| sample_custodian | Peter Unmack, Matthew Campbell |
| sample_id | NE2508.G1_fin |
| sample_id_description | Peter Unmack field code |
| sample_quality | high |
| sample_type | tissue sample |
| scientific_name | Nematalosa erebi |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| sex_certainty | 1.0 |
| species | erebi |
| specimen_custodian | Peter Unmack, Matthew Campbell |
| specimen_id | NE2508.G1 |
| specimen_id_description | Peter Unmack field code |
| state_or_region | NSW |
| taxon_id | 316163 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1842 |
| tissue | blood |
| tissue_preservation | Nitrogen |
| tissue_preservation_temperature | -196.0 |
| wild_captive | wild |
| work_order | 27006 |