Cryptic Carp Gudgeon, Reference genome, PacBio-HiFi, fin
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This dataset is currently under a short embargo period until July 21, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
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Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member |
| Access Control Date | 2026-07-21 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink 25.1.0.257714 |
| ancillary_notes | NA |
| associated_media | NA |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/pacbio-hifi/BPAOPS-1844/20250714_FISH_BRF_m84118_250714_235739_s4/ |
| bioplatforms_dataset_id | 102.100.100/618608 |
| bioplatforms_library_id | 102.100.100/616622 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614618 |
| ccg_jira_ticket | BPAOPS-1844 |
| cell_postion | 1_A01 |
| class | Actinopterygii |
| collection_date | 2025-02-16 |
| collection_method | Bait Trap |
| collection_permit | AEC 202414067 |
| collector | Peter Unmack, Alex Bradbury |
| collector_sample_id | PU25-02B |
| common_name | Cryptic Carp Gudgeon |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-07-21 |
| date_of_transfer_to_archive | 2025-07-21 |
| death_date | 2025-06-23 |
| decimal_latitude_public | -34.816082 |
| decimal_longitude_public | 139.367258 |
| dna_treatment | blue pippin size selection of pooled libraries |
| env_broad_scale | freshwater biome [ENVO_00000873] |
| env_local_scale | freshwater river biome [ENVO_01000253] |
| env_medium | river water [ENVO_01000599] |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | PacBio_WGS53_969 |
| facility_sample_id | 969-4 |
| family | Eleotridae |
| flowcell_id | m84118_250714_235739_s4 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250714_FISH_BRF_m84118_250714_235739_s4 |
| genotypic_sex | not determined |
| genus | Hypseleotris |
| health_state | healthy |
| identified_by | Peter Unmack |
| insert_size_range | 15586 |
| latitude | -34.816082 |
| library_comments | Shearing with Microlab Prep |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_index_id_dual | bc2072 |
| library_index_seq_dual | TATCAGTAGTGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 65.4 |
| library_prep_date | 2025-07-08 |
| library_prepared_by | Xiangning Liu |
| library_selection | DNA shearing |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_info_restricted | no |
| location_text | Saunders Creek at Lenger Reserve pool downstream of Springs Road, 5.3 km east of Punthari |
| longitude | 139.367258 |
| material_conc_ng_ul | 75.6 |
| material_extracted_by | Matthew McGee, Peter_Unmack |
| material_extraction_date | 2025-06-23 |
| material_extraction_method | PacBio Nanobind PanDNA kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | obvious from external characters |
| movie_length | 30.0 |
| n_libraries_pooled | 3.0 |
| order | Gobiiformes |
| phenotypic_sex | male |
| phylum | Chordata |
| project_collaborators | Peter Unmack |
| project_lead | Terry Bertozzi |
| sample_collection_type | University |
| sample_custodian | Peter Unmack, Terry Bertozzi |
| sample_id | HA2502B.G1_blood |
| sample_id_description | Peter Unmack field code |
| sample_quality | high |
| sample_type | tissue sample |
| scientific_name | Hypseleotris acropinna |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| sex_certainty | 1.0 |
| species | acropinna |
| specimen_custodian | Peter Unmack, Terry Bertozzi |
| specimen_id | HA2502B.G1 |
| specimen_id_description | Peter Unmack field code |
| state_or_region | SA |
| taxon_id | 2888835 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1844 |
| tissue | fin |
| tissue_preservation | Nitrogen |
| tissue_preservation_temperature | -196.0 |
| wild_captive | wild |
| work_order | 27006 |