Mangrove Blue Eye, Reference genome, PacBio-HiFi, fin
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This dataset is currently under a short embargo period until July 21, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member |
| Access Control Date | 2026-07-21 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink 25.1.0.257715 |
| ancillary_notes | NA |
| associated_media | NA |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/pacbio-hifi/BPAOPS-1841/20250714_FISH_BRF_m84118_250714_235739_s1/ |
| bioplatforms_dataset_id | 102.100.100/618614 |
| bioplatforms_library_id | 102.100.100/616628 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614623 |
| ccg_jira_ticket | BPAOPS-1841 |
| cell_postion | 1_A01 |
| class | Actinopterygii |
| collection_date | 2024-09-26 |
| collection_method | Seine net |
| collection_permit | AEC 202414067 |
| collector | Peter Unmack, Matthew McGee |
| collector_sample_id | PU24-23 |
| common_name | Mangrove Blue Eye |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-07-21 |
| date_of_transfer_to_archive | 2025-07-21 |
| death_date | 2025-06-23 |
| decimal_latitude_public | -21.1632415545 |
| decimal_longitude_public | 149.1872618635 |
| dna_treatment | blue pippin size selection of pooled libraries |
| env_broad_scale | marine biome [ENVO_00000447] |
| env_local_scale | estuarine biome [ENVO_01000020] |
| env_medium | ?? |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | PacBio_WGS53_969 |
| facility_sample_id | 969-1 |
| family | Pseudomugilidae |
| fast5_compression | bam |
| flowcell_id | m84118_250714_235739_s1 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250714_FISH_BRF_m84118_250714_235739_s1 |
| genotypic_sex | not determined |
| genus | Pseudomugil |
| health_state | healthy |
| identified_by | Peter Unmack |
| insert_size_range | 14910 |
| latitude | -21.1632415545 |
| library_comments | Shearing with Microlab Prep |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_index_id_dual | bc2069 |
| library_index_seq_dual | TCTATGACATGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 62.4 |
| library_prep_date | 2025-07-08 |
| library_prepared_by | Xiangning Liu |
| library_selection | DNA shearing |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_info_restricted | no |
| location_text | drain on north side of Mackay airport, off Bridge Road just above where the drain turns south |
| longitude | 149.1872618635 |
| material_conc_ng_ul | 51.6 |
| material_extracted_by | Matthew McGee, Peter_Unmack |
| material_extraction_date | 2025-06-23 |
| material_extraction_method | PacBio Nanobind PanDNA kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | obvious from external characters |
| movie_length | 30.0 |
| n_libraries_pooled | 4.0 |
| order | Ovalentaria |
| phenotypic_sex | male |
| phylum | Chordata |
| project_collaborators | Peter Unmack, Matthew McGee |
| project_lead | Michael Hammer |
| sample_collection_type | University |
| sample_custodian | Peter Unmack, Matthew McGee |
| sample_id | PH2423.G1_fin |
| sample_id_description | Peter Unmack field code |
| sample_quality | high |
| sample_type | tissue sample |
| scientific_name | Pseudomugil halophilus |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| sex_certainty | 1.0 |
| species | halophilus |
| specimen_custodian | Peter Unmack, Matthew McGee |
| specimen_id | PH2423.G1 |
| specimen_id_description | Peter Unmack field code |
| state_or_region | QLD |
| taxon_id | 3240756 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1841 |
| tissue | fin |
| tissue_preservation | Nitrogen |
| tissue_preservation_temperature | -196.0 |
| wild_captive | wild |
| work_order | 27006 |