Flathead Galaxias, Reference genome, PacBio-HiFi, fin
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This dataset is currently under a short embargo period until July 21, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Geospatial Coverage |
Dataset extentMap tiles & Data by OpenStreetMap, under CC BY SA.
|
| Resource Permissions | organization_member |
| Access Control Date | 2026-07-21 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink 25.1.0.257715 |
| ancillary_notes | NA |
| associated_media | NA |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/fish_staging/pacbio-hifi/BPAOPS-1843/20250714_FISH_BRF_m84118_250714_235739_s3/ |
| bioplatforms_dataset_id | 102.100.100/618615 |
| bioplatforms_library_id | 102.100.100/616629 |
| bioplatforms_project | Australian Fish Genomics Initiative |
| bioplatforms_project_ncbi_umbrellabioproject_id | PRJNA1098053 |
| bioplatforms_sample_id | 102.100.100/614624 |
| ccg_jira_ticket | BPAOPS-1843 |
| cell_postion | 1_A01 |
| class | Actinopterygii |
| collection_date | 2024-11-15 |
| collection_method | Fine Mesh Fyke Net |
| collection_permit | AEC 22-007 |
| collector | Tarmo A. Raadik |
| collector_sample_id | TR-24-201 |
| common_name | Flathead Galaxias |
| country | Australia |
| data_context | Reference genome |
| data_type | PacBio-HiFi |
| date_of_transfer | 2025-07-21 |
| date_of_transfer_to_archive | 2025-07-21 |
| death_date | 2024-11-15 |
| decimal_latitude_public | -37.07634 |
| decimal_longitude_public | 144.3052 |
| dna_treatment | blue pippin size selection of pooled libraries |
| env_broad_scale | freshwater biome [ENVO_00000873] |
| env_local_scale | freshwater river biome [ENVO_01000253] |
| env_medium | river water [ENVO_01000599] |
| experimental_design | PacBio HiFi, long reads |
| facility_project_code | PacBio_WGS53_969 |
| facility_sample_id | 969-3 |
| family | Galaxiidae |
| fast5_compression | bam |
| flowcell_id | m84118_250714_235739_s3 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250714_FISH_BRF_m84118_250714_235739_s3 |
| genotypic_sex | not determined |
| genus | Galaxias |
| health_state | healthy |
| identified_by | Tarmo A. Raadik |
| insert_size_range | 15490 |
| latitude | -37.07634 |
| library_comments | Shearing with Microlab Prep |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_index_id_dual | bc2071 |
| library_index_seq_dual | CGAGTCTAGCGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 27.12 |
| library_prep_date | 2025-07-08 |
| library_prepared_by | Xiangning Liu |
| library_selection | DNA shearing |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | PacBio-HiFi |
| lifestage | adult |
| location_info_restricted | no |
| location_text | Dam off Bubbs Lane, ~4 km NNW of Elphinstone |
| longitude | 144.3052 |
| material_conc_ng_ul | 29.1 |
| material_extracted_by | Matthew McGee, Peter_Unmack |
| material_extraction_date | 2025-06-23 |
| material_extraction_method | PacBio Nanobind PanDNA kit |
| material_extraction_type | DNA |
| metadata_revision_date | 2025-07-24 |
| metadata_revision_filename | 20250724_FISH_Sample_metadata_COMBINED-FOR-PORTAL_NOLATLON.xlsx |
| method_sex_determination | none |
| movie_length | 30.0 |
| n_libraries_pooled | 4.0 |
| order | Galaxiiformes |
| phenotypic_sex | unknown |
| phylum | Chordata |
| project_collaborators | Matthew McGee |
| project_lead | Tarmo A. Raadik |
| sample_collection_type | University |
| sample_custodian | Tarmo Raadik, Matthew McGee |
| sample_id | GRGT.G1_fin |
| sample_id_description | Tarmo Raadik field code |
| sample_quality | high |
| sample_type | tissue sample |
| scientific_name | Galaxias rostratus |
| sequencing_facility | BRF |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| sex_certainty | juvenile stage |
| species | rostratus |
| specimen_custodian | Tarmo Raadik, Matthew McGee |
| specimen_id | GRTR.G1 |
| specimen_id_description | Tarmo Raadik field code |
| state_or_region | VIC |
| taxon_id | 613163 |
| taxonomic_group | Fish |
| ticket | BPAOPS-1843 |
| tissue | fin |
| tissue_preservation | Nitrogen |
| tissue_preservation_temperature | -196.0 |
| wild_captive | wild |
| work_order | 27006 |