Forest Resilience Illumina-Shortread, Resequencing, Library ID: 645514
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until May 16, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:forest-resilience-consortium-members |
| Access Control Date | 2026-05-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | DRAGEN BCLConvert 4.3.143 |
| bait_set_name | N/A |
| bait_set_reference | N/A |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/forest_staging/illumina-shortread/BPAOPS-1783/20250514_FOR_647502_22KYV5LT4/ |
| bioplatforms_dataset_id | 102.100.100/647502 |
| bioplatforms_library_id | 102.100.100/645514 |
| bioplatforms_project | Forest Resilience |
| bioplatforms_sample_id | 102.100.100/643264 |
| ccg_jira_ticket | BPAOPS-1783 |
| cell_postion | N/A |
| class | Magnoliopsida |
| collection_date | 2025-02-12 |
| collection_method | sampled |
| collection_permit | Botanic Gardens of Sydney |
| collector | E. Lord |
| collector_sample_id | NA |
| common_name | Flame bottle tree |
| country | Australia |
| dataset_id | 647502 |
| date_of_transfer | 2025-05-16 |
| date_of_transfer_to_archive | 2025-05-22 |
| description | Illumina-Shortread |
| dna_treatment | N/A |
| experimental_design | N/A |
| facility | BRF |
| facility_project_code | N/A |
| facility_sample_id | 645514_FOR_BRF_22KYV5LT4_TCTTGTCGGC-CCACCTGTGT |
| family | Malvaceae |
| fast5_compression | N/A |
| flowcell_id | 22KYV5LT4 |
| flowcell_type | NovaSeq X Series 25B |
| folder_name | 20250514_FOR_647502_22KYV5LT4 |
| genus | Brachychiton |
| health_state | Healthy |
| identified_by | Botanic Gardens of Sydney |
| indigenous_location | Gadigal |
| insert_size_range | 400 bp |
| library_comments | N/A |
| library_construction_protocol | Illumina DNA Prep |
| library_id | 645514 |
| library_index_id | UDP0264 |
| library_index_id_dual | UDP0264 |
| library_index_seq_dual | CCACCTGTGT |
| library_index_sequence | TCTTGTCGGC |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 8.3 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATtcttgtcggcCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACccacctgtgtTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 5 |
| library_prepared_by | Lachlan Morrison |
| library_selection | N/A |
| library_source | gDNA |
| library_strategy | Tagmentation |
| library_type | illumina-shortread |
| life_stage | Mature plant |
| location_text | Botanic Gardens of Sydney Lawn L40b |
| material_conc_ng_ul | 189.0 |
| material_extracted_by | ReCER |
| material_extraction_date | 2025-02-14 |
| material_extraction_method | Qiagen Plant Pro Modified |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-05-18 |
| metadata_revision_filename | 2025-04-17_Combined_Forest_sample_metadata_forQCIF.xlsx |
| model_base_caller | N/A |
| movie_length | N/A |
| n_libraries_pooled | 1.0 |
| order | Malvales |
| phylum | Streptophyta |
| project_aim | Resequencing |
| sample_custodian | Botanic Gardens of Sydney |
| sample_id | B_acerifolius_2 |
| sample_id_description | Botanic Gardens of Sydney |
| sample_quality | Excellent |
| sample_submitter_email | edana.lord@botanicgardens.nsw.gov.au |
| sample_submitter_name | Edana Lord |
| sample_type | Whole organism |
| scientific_name | Brachychiton acerifolius |
| scientific_name_authorship | (A.Cunn. ex G.Don) F.Muell., 1857 |
| scientific_name_note | NA |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_kit_chemistry_version | N/A |
| sequencing_model | NovaSeq X Series |
| sequencing_platform | Illumina |
| source_population | NA |
| species | acerifolius |
| specimen_custodian | Botanic Gardens of Sydney |
| specimen_id | B_acerifolius_2 |
| state_or_region | New South Wales |
| sub_species | NA |
| taxon_id | 93745 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1783 |
| tissue | Leaf |
| tissue_preservation | Frozen |
| tissue_preservation_temperature | -80°C |
| wild_captive | Wild |
| work_order | 28002 |