Forest Resilience Illumina-Shortread, Resequencing, Library ID: 645515
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until May 16, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:forest-resilience-consortium-members |
| Access Control Date | 2026-05-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysis_software | DRAGEN BCLConvert 4.3.144 |
| bait_set_name | N/A |
| bait_set_reference | N/A |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/forest_staging/illumina-shortread/BPAOPS-1783/20250514_FOR_647502_22KYV5LT4/ |
| bioplatforms_dataset_id | 102.100.100/647502 |
| bioplatforms_library_id | 102.100.100/645515 |
| bioplatforms_project | Forest Resilience |
| bioplatforms_sample_id | 102.100.100/643265 |
| ccg_jira_ticket | BPAOPS-1783 |
| cell_postion | N/A |
| class | Equisetopsida |
| collection_date | 2025-01-16 |
| collection_method | Sampled |
| collection_permit | Botanic Gardens of Sydney |
| collector | E. Lord |
| collector_sample_id | NA |
| common_name | Hairy leaved bolly gum |
| country | Australia |
| dataset_id | 647502 |
| date_of_transfer | 2025-05-16 |
| date_of_transfer_to_archive | 2025-05-22 |
| description | Illumina-Shortread |
| dna_treatment | N/A |
| experimental_design | N/A |
| facility | BRF |
| facility_project_code | N/A |
| facility_sample_id | 645515_FOR_BRF_22KYV5LT4_CTAACCGAGA-TCGATGCGCG |
| family | Lauraceae |
| fast5_compression | N/A |
| flowcell_id | 22KYV5LT4 |
| flowcell_type | NovaSeq X Series 25B |
| folder_name | 20250514_FOR_647502_22KYV5LT4 |
| genus | Neolitsea |
| health_state | Healthy |
| identified_by | Australian Botanic Garden Mount Annan |
| indigenous_location | Dharawal |
| insert_size_range | 400 bp |
| library_comments | N/A |
| library_construction_protocol | Illumina DNA Prep |
| library_id | 645515 |
| library_index_id | UDP0265V3 |
| library_index_id_dual | UDP0265V3 |
| library_index_seq_dual | TCGATGCGCG |
| library_index_sequence | CTAACCGAGA |
| library_layout | Paired end |
| library_location | BRF Freezer |
| library_ng_ul | 14.0 |
| library_oligo_sequence | CAAGCAGAAGACGGCATACGAGATctaaccgagaCTGTCTCTTATACACATCTCCGAGCCCACGAGAC |
| library_oligo_sequence_dual | AATGATACGGCGACCACCGAGATCTACACtcgatgcgcgTCGTCGGCAGCGTCAGATGTGTATAAGAGACAG |
| library_pcr_cycles | 5 |
| library_prepared_by | Lachlan Morrison |
| library_selection | N/A |
| library_source | gDNA |
| library_strategy | Tagmentation |
| library_type | illumina-shortread |
| life_stage | Mature plant |
| location_text | Australian Botanic Garden Mount Annan bed 33 |
| material_conc_ng_ul | 47.7 |
| material_extracted_by | ReCER |
| material_extraction_date | 2025-02-28 |
| material_extraction_method | Qiagen Plant Pro Modified |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-05-18 |
| metadata_revision_filename | 2025-04-17_Combined_Forest_sample_metadata_forQCIF.xlsx |
| model_base_caller | N/A |
| movie_length | N/A |
| n_libraries_pooled | 1.0 |
| order | Laurales |
| phylum | Charophyta |
| project_aim | Resequencing |
| sample_collection_type | Living collection |
| sample_custodian | Botanic Gardens of Sydney |
| sample_id | N_dealbata_4 |
| sample_id_description | Botanic Gardens of Sydney |
| sample_quality | Excellent |
| sample_submitter_email | edana.lord@botanicgardens.nsw.gov.au |
| sample_submitter_name | Edana Lord |
| sample_type | Whole organism |
| scientific_name | Neolitsea dealbata |
| scientific_name_authorship | Merr., 1948 |
| scientific_name_note | NA |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_kit_chemistry_version | N/A |
| sequencing_model | NovaSeq X Series |
| sequencing_platform | Illumina |
| source_population | NA |
| species | dealbata |
| specimen_custodian | Botanic Gardens of Sydney |
| specimen_id | N_dealbata_4 |
| state_or_region | New South Wales |
| taxon_id | 344104 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1783 |
| tissue | Leaf |
| tissue_preservation | Frozen |
| tissue_preservation_temperature | -80°C |
| wild_captive | Wild |
| work_order | 28002 |