Forest Resilience PacBio-HiFi, Reference genome, Library ID: 645249
Dataset size is: 1.04 MiB
This dataset is currently under a short embargo period until March 27, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:forest-resilience-consortium-members |
| Access Control Date | 2026-03-27 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink 25.1.0.257715 |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/forest_staging/pacbio-hifi/BPAOPS-1766/20250322_FOR_BRF_m84118_250322_010010_s1/ |
| bioplatforms_dataset_id | 102.100.100/647499 |
| bioplatforms_library_id | 102.100.100/645249 |
| bioplatforms_project | Forest Resilience |
| bioplatforms_sample_id | 102.100.100/642999 |
| ccg_jira_ticket | BPAOPS-1766 |
| cell_postion | 1_B01 |
| class | Magnoliopsida |
| collection_date | 2024-12-04 |
| collection_method | Sampled |
| collection_permit | Botanic Gardens of Sydney |
| collector | E. Lord |
| common_name | Red Cedar |
| country | Australia |
| dataset_id | 647499 |
| date_of_transfer | 2025-03-27 |
| date_of_transfer_to_archive | 2025-04-01 |
| description | PacBio-HiFi |
| dna_treatment | Pippin size selection and shearing |
| facility | BRF |
| facility_sample_id | 876-2 |
| family | Meliaceae |
| flowcell_id | m84118_250322_010010_s1 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250322_FOR_BRF_m84118_250322_010010_s1 |
| genus | Toona |
| health_state | healthy |
| identified_by | Botanic Gardens of Sydney |
| indigenous_location | Gadigal |
| insert_size_range | 15848.0 |
| library_comments | multiplexed with another sample for FOR |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 645249 |
| library_index_id_dual | bc2012 |
| library_index_seq_dual | TCGTACTACTGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 36.3 |
| library_prep_date | 2025-03-19 |
| library_prepared_by | Ziyan Zhang |
| library_selection | Pippin size slection, shearing and HiFi prep |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | HiFi |
| life_stage | mature plant |
| location_text | Botanic Gardens of Sydney Bed 9 |
| material_conc_ng_ul | 800.0 |
| material_extracted_by | ReCER |
| material_extraction_date | 2025-01-22 |
| material_extraction_method | CTAB (Lu-Irving, Rutherford 2021) |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-04-04 |
| metadata_revision_filename | 2025-02-25_Combined_Forest_sample_metadata_forQCIF_v2.xlsx |
| movie_length | 30.0 |
| n_libraries_pooled | 2 |
| order | Sapindales |
| phylum | Streptophyta |
| project_aim | Reference genome |
| sample_collection_type | Living collection |
| sample_custodian | Botanic Gardens of Sydney |
| sample_id | toona_ciliata |
| sample_quality | excellent |
| sample_submitter_email | edana.lord@botanicgardens.nsw.gov.au |
| sample_submitter_name | Edana Lord |
| sample_type | whole organism |
| scientific_name | Toona ciliata |
| scientific_name_authorship | M.Roem., 1846 |
| scientific_name_note | NA |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| source_population | NA |
| species | ciliata |
| specimen_custodian | Botanic Gardens of Sydney |
| specimen_id | 15281/2 |
| specimen_id_description | Botanic Gardens of Sydney |
| state_or_region | New South Wales |
| sub_species | NA |
| taxon_id | 67918 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1766 |
| tissue | leaf |
| tissue_preservation | frozen |
| tissue_preservation_temperature | -80.0 |
| wild_captive | unknown |