Forest Resilience PacBio-HiFi, Reference genome, Library ID: 645516
Dataset size is: 0.00 Bit
This dataset is currently under a short embargo period until March 27, 2026 to enable primary access by research partners.
If you would like access during this period please contact us here or contact the project lead directly (see details in the table below) for collaboration opportunities.
Data and Resources
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:forest-resilience-consortium-members |
| Access Control Date | 2026-03-27 |
| Access Control Mode | date |
| Sequence Data Type | pacbio-hifi |
| analysis_software | SMRTLink 25.1.0.257715 |
| bait_set_name | RANDOM |
| bait_set_reference | GENOMIC |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/forest_staging/pacbio-hifi/BPAOPS-1767/20250322_FOR_BRF_m84118_250322_010010_s2/ |
| bioplatforms_dataset_id | 102.100.100/647503 |
| bioplatforms_library_id | 102.100.100/645516 |
| bioplatforms_project | Forest Resilience |
| bioplatforms_sample_id | 102.100.100/643266 |
| ccg_jira_ticket | BPAOPS-1767 |
| cell_postion | 1_B01 |
| class | Equisetopsida |
| collection_date | 2025-01-16 |
| collection_method | Sampled |
| collection_permit | Botanic Gardens of Sydney |
| collector | E. Lord |
| collector_sample_id | NA |
| common_name | Hairy leaved bolly gum |
| country | Australia |
| dataset_id | 647503 |
| date_of_transfer | 2025-03-27 |
| date_of_transfer_to_archive | 2025-04-01 |
| description | PacBio-HiFi |
| dna_treatment | Pippin size selection and shearing |
| facility | BRF |
| facility_sample_id | 878.0 |
| family | Lauraceae |
| flowcell_id | m84118_250322_010010_s2 |
| flowcell_type | Revio SMRT Cells 25M |
| folder_name | 20250322_FOR_BRF_m84118_250322_010010_s2 |
| genus | Neolitsea |
| health_state | healthy |
| identified_by | Australian Botanic Garden Mount Annan |
| indigenous_location | Dharawal |
| insert_size_range | 15610.0 |
| library_comments | multiplexed with another sample for FOR |
| library_construction_protocol | SMRTbell® prep kit 3.0 |
| library_id | 645516 |
| library_index_id_dual | bc014 |
| library_index_seq_dual | ATACATGCACGAGTAT |
| library_layout | NA |
| library_location | BRF labs |
| library_ng_ul | 33.9 |
| library_prep_date | 2025-03-19 |
| library_prepared_by | Ziyan Zhang |
| library_selection | Pippin size slection, shearing and HiFi prep |
| library_source | Extracted DNA |
| library_strategy | WGS |
| library_type | HiFi |
| life_stage | mature plant |
| location_text | Australian Botanic Garden Mount Annan bed 33 |
| material_conc_ng_ul | 212.0 |
| material_extracted_by | ReCER |
| material_extraction_date | 2025-02-02 |
| material_extraction_method | Jones et al 2021 |
| material_extraction_type | gDNA |
| metadata_revision_date | 2025-04-04 |
| metadata_revision_filename | 2025-02-25_Combined_Forest_sample_metadata_forQCIF_v2.xlsx |
| movie_length | 30.0 |
| n_libraries_pooled | 2 |
| order | Laurales |
| phylum | Charophyta |
| project_aim | Reference genome |
| sample_collection_type | Living collection |
| sample_custodian | Australian Botanic Garden Mount Annan |
| sample_id | neolitsea_dealbata |
| sample_quality | excellent |
| sample_submitter_email | edana.lord@botanicgardens.nsw.gov.au |
| sample_submitter_name | Edana Lord |
| sample_type | whole organism |
| scientific_name | Neolitsea dealbata |
| scientific_name_authorship | Merr., 1948 |
| scientific_name_note | NA |
| sequencing_facility | Biomolecular Resource Facility |
| sequencing_kit_chemistry_version | SPRQ |
| sequencing_model | Revio |
| sequencing_platform | PacBio |
| source_population | NA |
| species | dealbata |
| specimen_custodian | Australian Botanic Garden Mount Annan |
| specimen_id | A1986-2984/1 |
| specimen_id_description | Australian Botanic Garden Mount Annan |
| state_or_region | New South Wales |
| taxon_id | 344104 |
| taxonomic_group | Plant |
| ticket | BPAOPS-1767 |
| tissue | leaf |
| tissue_preservation | -80.0 |
| tissue_preservation_temperature | frozen |
| wild_captive | wild |