Sarocladium glaucum, reference genome, ont-promethion, NA
Dataset size is: 733.94 GiB
Data and Resources
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465910_FUN_BRF_PAW74909_ONTProme... Metadata Only TAR
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FUN_BRF_PAW74909_ONTPromethION_b... Metadata Only
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FUN_BRF_PAW74909_ONTPromethION_s... Metadata Only
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FUN_BRF_PAW74909_ONTPromethION_pod5.tar Metadata Only TAR
Optional
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FUN_BRF_PAW74909_metadata.xlsx Metadata Only XLSX
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FUN_BRF_PAW74909_ONTPromethION_r... Metadata Only HTML
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465910_FUN_BRF_PAW74909_ONTProme... Metadata Only TAR
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:fungi-consortium-members |
Access Control Date | 2025-10-22 |
Access Control Mode | date |
Sequence Data Type | ont-promethion |
altitude | 25.25 |
analysis_software | MinKNOW 24.06.14 |
ancillary_notes | Funding: AAS-4406 |
associated_media | NA |
base_url | https://downloads-qcif.bioplatforms.com/bpa/fungi_staging/ont-promethion/BPAOPS-1708/20241017_FUN_BRF_PAW74909/ |
bioplatforms_dataset_id | 102.100.100/467798 |
bioplatforms_library_id | 102.100.100/465910 |
bioplatforms_project | Australian Functional Fungi Initiative |
bioplatforms_sample_id | 102.100.100/463910 |
ccg_jira_ticket | BPAOPs-1708 |
cell_postion | 2E |
class | Sordariomycetes |
collection_date | 2019-02-16 |
collection_method | Dry-sieving |
collection_permit | ATEP 18-19-4406 |
collector | Belinda Ferrari, Catherine King, Eden Zhang, Daniel Wilkins, Mark Raymond |
collector_sample_id | AAD 174394 |
common_name | Sarocladium glaucum |
country | Antarctica |
data_context | reference genome |
data_type | ONT-promethion |
date_of_transfer | 2024-10-22 |
date_of_transfer_to_archive | 2024-10-24 |
decimal_latitude_public | -66.36774 |
decimal_longitude_public | 110.58534 |
depth | 0.03-0.1 |
dna_treatment | Blue pippin 10Kb size selection |
env_broad_scale | polar biome [ENVO_01000339] |
env_local_scale | polar desert biome [ENVO_01000186], cold desert [ENVO_01000382] |
env_medium | soil [ENVO_00001998] |
experimental_design | ONT long reads |
facility_project_code | NA |
facility_sample_id | ONT_gDNA132_790_3 |
family | Sarocladiaceae |
fast5_compression | pod5 bvz |
flow_cell_id | PAW74909 |
flowcell_id | PAW74909 |
flowcell_type | FLO-PRO114M |
folder_name | 20241017_FUN_BRF_PAW74909 |
genus | Sarocladium |
habitat | polar desert biome |
health_state | NA |
host_common_name | NA |
host_family | NA |
host_organ | NA |
host_scientific_name | NA |
host_status | NA |
host_symptom | NA |
identified_by | Priyanka R. Majumdar | Nicole Benaud | Xabier Vázquez-Campos | Belinda Ferrari | Brett Summerell |
indigenous_location | NA |
insert_size_range | 34.9 Kbp |
isolate | KMR55 |
library_construction_protocol | Native barcoded ligation libraries with NBD114 |
library_id | 465910 |
library_index_id | barcode24 |
library_index_seq | GCATAGTTCTGCATGATGGGTTAG |
library_layout | ONT-PromethION |
library_location | BRF labs |
library_ng_ul | 4.35 |
library_oligo_sequence | 5' - AAGGTTAA - barcode - CAGCACCT - 3' |
library_prep_date | 2024-10-17 |
library_prepared_by | Ziyan Zhang |
library_selection | random |
library_source | genomic |
library_strategy | WGS |
library_type | ont-promethion |
life_stage | NA |
location_info_restricted | no |
location_text | Robinson Ridge |
material_conc_ng_ul | Unknown |
material_extracted_by | Priyanka R. Majumdar |
material_extraction_method | CTAB-based |
material_extraction_type | DNA |
metadata_revision_date | 2024-11-12 |
metadata_revision_filename | FUN_MASTER_sample_metadata_FORDP_20241111_NOLATLON.xlsx |
model_base_caller | Super-accurate basecalling v4.3.0, 400 bps |
movie_length | 72h |
n_libraries_pooled | 3.0 |
order | Hypocreales |
phylum | Ascomycota |
project_lead | Belinda Ferrari |
sample_collection_type | Living collection |
sample_custodian | Belinda Ferrari (UNSW) |
sample_id | KMR55_DNA_LR |
sample_id_description | specimen_id+extracted_material(+condition+replicate) |
sample_quality | Excellent |
sample_type | Whole organism |
scientific_name | Sarocladium glaucum |
scientific_name_authorship | (W. Gams) Summerbell |
sequencing_facility | BRF |
sequencing_kit_chemistry_version | SQK-NBD114.24 |
sequencing_model | ONT PromethION |
sequencing_platform | Oxford Nanopore |
source_population | NA |
species | Sarocladium glaucum |
specimen_custodian | Belinda Ferrari (UNSW) |
specimen_id | KMR55 |
specimen_id_description | Ferrari lab fungal Internal identifier |
state_or_region | Eastern ANorthern Territoryarctica |
taxon_id | 706495.0 |
taxonomic_group | Fungi |
temperature | Unknown |
ticket | BPAOPS-1708 |
tissue | NA |
tissue_preservation | NA |
tissue_preservation_temperature | NA |
type_status | NA |
wild_captive | Other (culture) |
work_order | 21017.0 |