GAP Hi-C, Reference genomes, 376318
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-05-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| bait_set_reference | NA |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-hi-c/BPAOPS-1075/20210517_GAP_BRF_AH5TJYDRXY/ |
| ccg_jira_ticket | BPAOPS-1075 |
| country | Australia |
| data_type | Main dataset (Phase 2 ref genomes) |
| dataset_id | 83683 |
| date_data_published | 28/5/2021 |
| date_of_transfer | 2021-05-20 |
| date_of_transfer_to_archive | 2021-05-27 |
| description | Hi-C |
| dna_extract | NA |
| dna_extract_pressed_sheet | NA |
| download | https://data.bioplatforms.com/dataset?q=ticket%3ABPAOPS-1075 |
| facility | BRF |
| family | Campanulaceae |
| flow_cell_id | AH5TJYDRXY |
| folder_name | 20210517_GAP_BRF_AH5TJYDRXY |
| genomic_material_associated_references | In the protocol |
| genomic_material_preparation_date | 2020-12-18 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Phase Genomics Proximo Hi-C (Plant) Kit KT3040 Protocol Version 4.0 Beta (October 2020) https://info.phasegenomics.com/protocols |
| genomic_material_preparation_type | HiC. Crosslinked leaf chromatin prep for proximity contacts. Enzyme DpnII |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | CANB |
| id_vetting_by | Adrienne Nicotra | The Australian National University |
| id_vetting_date | 2021-04-12 |
| library_construction_protocol | HiC |
| library_id | 380528 |
| living_collections_catalog_number | ANJH2019 |
| living_collections_event_date | 2020-10-10 |
| living_collections_material_sample_rna | NA |
| living_collections_record_number | WC01 |
| living_collections_recorded_by | Adrienne Nicotra, Jemimah Hamilton and Kelli Gowland |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | SL100305 |
| preservation_date_begin | 2020-10-10 |
| preservation_temperature | Leaf −80°C (2020-10-10) | Library -20°C (2020-12-18) | (no DNA) |
| preservation_type | Freezing |
| project_aim | Reference genomes |
| run_format | 150 bp paired end |
| sample_id | 102.100.100/376318 |
| sample_submission_date | 2021-05-13 |
| sample_submitter_email | jemimah.hamilton@anu.edu.au | ashley.jones@anu.edu.au |
| sample_submitter_name | Jemimah Hamilton | Ash Jones |
| scientific_name | Wahlenbergia ceracea |
| scientific_name_authorship | Lothian |
| scientific_name_notes | NA |
| sequencer | NovaSeq 6000 |
| silica_gel | no |
| silica_gel_id | NA |
| silica_gel_pressed_sheet | NA |
| state_or_territory | NSW |
| ticket | BPAOPS-1075 |
| voucher_herbarium_catalog_number | CANB 924602 |
| voucher_herbarium_collector_id | Adrienne Nicotra | The Australian National University |
| voucher_herbarium_event_date | 2021-04-12 |
| voucher_herbarium_record_number | CANB 924602.1 |
| voucher_herbarium_recorded_by | Adrienne Nicotra | The Australian National University |