GAP Hi-C, Reference genomes, 376316
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-05-20 |
| Access Control Mode | date |
| Sequence Data Type | illumina-hic |
| bait_set_reference | not applicable |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-hi-c/BPAOPS-1075/20210517_GAP_BRF_AH5TJYDRXY/ |
| ccg_jira_ticket | BPAOPS-1075 |
| country | Australia |
| data_type | Main dataset (Phase 2 ref genomes) |
| dataset_id | 83683 |
| date_data_published | 28/5/2021 |
| date_of_transfer | 2021-05-20 |
| date_of_transfer_to_archive | 2021-05-27 |
| description | Hi-C |
| download | https://data.bioplatforms.com/dataset?q=ticket%3ABPAOPS-1075 |
| facility | BRF |
| family | Rutaceae |
| flow_cell_id | AH5TJYDRXY |
| folder_name | 20210517_GAP_BRF_AH5TJYDRXY |
| genomic_material_associated_references | In the protocol |
| genomic_material_preparation_date | 2021-04-21 |
| genomic_material_preparation_materials | In the protocol |
| genomic_material_preparation_process | Phase Genomics Proximo Hi-C (Plant) Kit KT3040 Protocol Version 4.0 (February 2021) https://info.phasegenomics.com/protocols |
| genomic_material_preparation_type | HiC. Crosslinked leaf chromatin prep for proximity contacts. Enzyme DpnII |
| genomic_material_prepared_by | Ashley Jones |
| herbarium_code | NE |
| id_vetting_by | Jeremy Bruhl |
| id_vetting_date | 2019-03-09 |
| library_construction_protocol | HiC |
| library_id | 380529 |
| living_collections_catalog_number | UNE20201105 |
| living_collections_event_date | 2020-11-05 |
| living_collections_material_sample_rna | not applicable |
| living_collections_record_number | SD354 |
| living_collections_recorded_by | S. Dema, J.J.Bruhl & I.Telford |
| location_notes | Wild Cattle Creek State Forest, N of Cascade, 2.3 km along Measuring Hut Road from junction with Moses Rock Road |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | SL100305 |
| preservation_date_begin | 2020-12-01 |
| preservation_temperature | Leaf −80°C (2020-12-01) | Library -20°C (2021-04-21) | (no DNA) |
| preservation_type | Freezing |
| project_aim | Reference genomes |
| run_format | 150 bp paired end |
| sample_id | 102.100.100/376316 |
| sample_submission_date | 2021-05-13 |
| sample_submitter_email | randre20@une.edu.au | ashley.jones@anu.edu.au |
| sample_submitter_name | Rose Andrew | Ash Jones |
| scientific_name | Phebalium stellatum |
| scientific_name_authorship | I.Telford & J.J.Bruhl |
| scientific_name_notes | NA |
| sequencer | NovaSeq 6000 |
| silica_gel | no |
| state_or_territory | NSW |
| ticket | BPAOPS-1075 |
| voucher_herbarium_catalog_number | 109286 |
| voucher_herbarium_collector_id | S.Dema |
| voucher_herbarium_event_date | 2019-09-03 |
| voucher_herbarium_record_number | S.Dema 354 |
| voucher_herbarium_recorded_by | Sangay Dema | Jeremy Bruhl | Ian Telford | University of New England |