GAP Illumina short read, Phylogenomics, 134479, Angiosperms353 bait kit
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:gap-consortium-members |
| Access Control Date | 2024-03-16 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | Illumina BCL2fastq |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1364/ |
| ccg_jira_ticket | BPAOPS-1364 |
| data_type | Pilot (FSP) |
| dataset_id | 134773 |
| date_data_published | 22/3/23 |
| date_of_transfer | 2023-03-17 |
| date_of_transfer_to_archive | 2023-03-20 |
| decimal_latitude_public | -37.382 |
| decimal_longitude_public | 145.747 |
| description | Illumina Short Read |
| dna_extract | No |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1364 |
| facility | BRF |
| family | Rutaceae |
| flow_cell_id | H5TT7DRX3 |
| folder_name | 20230316_GAP_BRF_standard_H5TT7DRX3 |
| genomic_material_prepared_by | CSIRO |
| herbarium_code | MELU |
| id_vetting_by | M.J. Bayly |
| id_vetting_date | 2012-01-06 |
| latitude | -37.382 |
| library_construction_protocol | NEB DNA Ultra II FS with Angio 353 capture |
| library_id | 134679 |
| longitude | 145.747 |
| metadata_revision_date | 2025-10-14 |
| metadata_revision_filename | 2025-10-15_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Pre-Nagoya |
| project_aim | Phylogenomics |
| run_format | SP flowcell with XP splitter 300 cycles (150 PE) |
| sample_id | 102.100.100/134479 |
| sample_submission_date | 2022-01-14 |
| sample_submitter_email | horel@student.unimelb.edu.au |
| sample_submitter_name | Harvey Orel |
| scientific_name | Correa reflexa var. reflexa |
| scientific_name_authorship | (Labill.) Vent. |
| scientific_name_notes | ML note: Standard library (prepared by BRF) |
| sequencer | Novaseq 6000 |
| silica_gel | Yes |
| silica_gel_id | MJB2197A |
| silica_gel_pressed_sheet | Independent silica collection made at time of voucher collection |
| ticket | BPAOPS-1364 |
| voucher_herbarium_catalog_number | MELUD112266a |
| voucher_herbarium_collector_id | M.J. Bayly |
| voucher_herbarium_event_date | 2012-01-06 |
| voucher_herbarium_record_number | MJB2197 |