GAP Illumina short read, Phylogenomics, 80318, Angiosperms353 bait kit
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2022-07-01 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.0 and Real Time Analysis (RTA) v3.4.4, bcl2fastq 2.20.0.422 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1101/20210630_GAP_AGRF_CAGRF21025255_HFVFMDRXY/ |
| ccg_jira_ticket | BPAOPS-1101 |
| data_type | Main dataset (AATOL Stage 1) |
| dataset_id | 83656 |
| date_data_published | 2/7/21 |
| date_of_transfer | 2021-07-01 |
| date_of_transfer_to_archive | 2021-07-01 |
| description | Illumina Short Read |
| dna_extract | No - Plant Material sent to AGRF for DNA extraction |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1101 |
| facility | AGRF |
| family | Euphorbiaceae |
| flow_cell_id | HFVFMDRXY |
| folder_name | 20210630_GAP_AGRF_CAGRF21025255_HFVFMDRXY |
| genomic_material_preparation_process | Qiagen DNeasy 96 Plant Kit |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | AGRF (Sep-Oct 2020) |
| herbarium_code | NSW |
| id_vetting_by | L. Woods |
| id_vetting_date | 2012-10-26 |
| library_construction_protocol | NEBNext Ultra II DNA with MyBaits Angiosperm 353 Capture |
| library_id | 380480 |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Pre-Nagoya |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/80318 |
| sample_submission_date | 2020-09-16 |
| sample_submitter_email | herve.sauquet@gmail.com |
| sample_submitter_name | Hervé Sauquet | NSW-NE |
| scientific_name | Amperea xiphoclada |
| scientific_name_authorship | (Seiber ex Spreng.) Druce |
| scientific_name_notes | var. xiphoclada |
| sequencer | NovaSeq 6000 |
| ticket | BPAOPS-1101 |
| voucher_herbarium_catalog_number | NSW903235 |
| voucher_herbarium_collector_id | L. Woods |
| voucher_herbarium_event_date | 2012-10-26 |
| voucher_herbarium_record_number | L. Woods 23 |
| voucher_herbarium_recorded_by | NSW |