GAP Illumina short read, Phylogenomics, 376899, Angiosperms353 bait kit
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-04-28 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1232/20220428_GAP_NGS_AGRF_CAGRF220410319_H77W5DRX2/ |
| ccg_jira_ticket | BPAOPS-1232 |
| country | Australia |
| data_type | Main dataset (AATOL Stage 2) |
| dataset_id | 83701 |
| date_data_published | 29/4/22 |
| date_of_transfer | 2022-04-28 |
| date_of_transfer_to_archive | 2022-04-28 |
| decimal_latitude_public | -33.72 |
| decimal_longitude_public | 150.47 |
| description | Illumina Short Read |
| dna_extract | Yes |
| dna_extract_pressed_sheet | Independent silica collection made at time of voucher collection. |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1232 |
| facility | AGRF |
| family | Myrtaceae |
| flow_cell_id | H77W5DRX2 |
| folder_name | 20220428_GAP_NGS_AGRF_CAGRF220410319_H77W5DRX2 |
| herbarium_code | NSW |
| latitude | -33.72 |
| library_construction_protocol | NEBNext Ultra II FS DNA Library Prep with MyBaits Angiosperm 353 Capture |
| library_id | 381601 |
| location_id | Hazelbrook, W edge of fire trail at end of Mount View Avenue |
| longitude | 150.47 |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | Confirmed: withheld by NSW |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/376899 |
| sample_submission_date | 2022-04-04 |
| sample_submitter_email | michelle.waycott@adelaide.edu.au |
| sample_submitter_name | Michelle Waycott |
| scientific_name | Harmogia densifolia |
| scientific_name_authorship | (Sm.) Schauer |
| sequencer | NovaSeq 6000 |
| state_or_territory | New South Wales |
| ticket | BPAOPS-1232 |
| voucher_herbarium_catalog_number | NSW1003373 |
| voucher_herbarium_collector_id | Jalaluddin, S.L. |
| voucher_herbarium_event_date | 2018-01-25 |
| voucher_herbarium_record_number | 61 |