GAP Illumina short read, Phylogenomics, 376967, Angiosperms353 bait kit
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-04-28 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1232/20220428_GAP_NGS_AGRF_CAGRF220410319_H77W5DRX2/ |
| ccg_jira_ticket | BPAOPS-1232 |
| country | Australia |
| data_type | Main dataset (AATOL Stage 2) |
| dataset_id | 83701 |
| date_data_published | 29/4/22 |
| date_of_transfer | 2022-04-28 |
| date_of_transfer_to_archive | 2022-04-28 |
| decimal_latitude_public | -33.46666667 |
| decimal_longitude_public | 122.14888889 |
| description | Illumina Short Read |
| dna_extract | Yes |
| dna_extract_pressed_sheet | Yes |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1232 |
| facility | AGRF |
| family | Myrtaceae |
| flow_cell_id | H77W5DRX2 |
| folder_name | 20220428_GAP_NGS_AGRF_CAGRF220410319_H77W5DRX2 |
| herbarium_code | PERTH |
| latitude | -33.46666667 |
| library_construction_protocol | NEBNext Ultra II FS DNA Library Prep with MyBaits Angiosperm 353 Capture |
| library_id | 381669 |
| location_id | Wittenoom Hills |
| longitude | 122.14888889 |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Pre-Nagoya |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/376967 |
| sample_submission_date | 2022-04-04 |
| sample_submitter_email | michelle.waycott@adelaide.edu.au |
| sample_submitter_name | Michelle Waycott |
| scientific_name | Rinzia icosandra |
| scientific_name_authorship | (F.Muell. ex Benth.) Rye |
| scientific_name_notes | At time of sample submission the APC accepted name for this taxon is Baeckea crassifolia Lindl. however the updated name Rinzia icosandra (F.Muell. ex Benth.) Rye is used in the recent publication Rye, B.L. (20 January 2017), An expanded circumscription and new infrageneric classification of Rinzia (Myrtaceae: Chamelaucieae). Nuytsia 28: 85-88 |
| sequencer | NovaSeq 6000 |
| state_or_territory | Western Australia |
| ticket | BPAOPS-1232 |
| voucher_herbarium_catalog_number | PERTH 8197369 |
| voucher_herbarium_collector_id | M. Trudgen | B. Moyle |
| voucher_herbarium_event_date | 2006-08-30 |
| voucher_herbarium_record_number | MET 22535 A |