GAP Illumina short read, Phylogenomics, 377053, Angiosperms353 bait kit
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-03-30 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1214/20220329_GAP_AGRF_CAGRF21088062_HYKKJDRXY/ |
| ccg_jira_ticket | BPAOPS-1214 |
| country | Australia |
| data_type | Main dataset (AATOL Stage 2) |
| dataset_id | 83699 |
| date_data_published | 4/4/22 |
| date_of_transfer | 2022-03-30 |
| date_of_transfer_to_archive | 2022-03-31 |
| description | Illumina Short Read |
| dna_extract | Yes |
| dna_extract_pressed_sheet | Independent silica collection made at time of voucher collection |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1214 |
| facility | AGRF |
| family | Proteaceae |
| flow_cell_id | HYKKJDRXY |
| folder_name | 20220329_GAP_AGRF_CAGRF21088062_HYKKJDRXY |
| genomic_material_preparation_date | 2022-01-01 |
| genomic_material_preparation_process | CTAB DNA extraction with 2x D-sorbitol pre-wash |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | Gareth Holmes |
| herbarium_code | NSW |
| id_vetting_by | Weston, P.H. |
| id_vetting_date | 2006-12-01 |
| library_construction_protocol | NEBNext Ultra II FS DNA Library Prep with MyBaits Angiosperm 353 Capture |
| library_id | 381851 |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Pre-Nagoya |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/377053 |
| sample_submission_date | 2022-02-09 |
| sample_submitter_email | gareth.holmes@rbg.vic.gov.au |
| sample_submitter_name | Gareth Holmes |
| scientific_name | Persoonia muelleri var. muelleri |
| scientific_name_authorship | (P.Parm.) Orchard. |
| sequencer | NovaSeq 6000 |
| silica_gel | Yes |
| silica_gel_id | PHW3021 |
| state_or_territory | Tasmania |
| ticket | BPAOPS-1214 |
| voucher_herbarium_catalog_number | NSW742114 |
| voucher_herbarium_collector_id | P.H. Weston |
| voucher_herbarium_event_date | 2006-12-01 |
| voucher_herbarium_record_number | PHW3021 |