GAP Illumina short read, Phylogenomics, 377117, Angiosperms353 bait kit
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-05-30 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1269/20220527_GAP_NGS_AGRF_CAGRF21088054_H7W7YDRX2/ |
| ccg_jira_ticket | BPAOPS-1269 |
| data_type | Main dataset (AATOL Stage 2) |
| dataset_id | 83702 |
| date_data_published | 31/5/22 |
| date_of_transfer | 2022-05-30 |
| date_of_transfer_to_archive | 2022-05-30 |
| description | Illumina Short Read |
| dna_extract | Yes |
| dna_extract_pressed_sheet | Independent silica collection made at time of voucher collection |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1269 |
| facility | AGRF |
| family | Rutaceae |
| flow_cell_id | H7W7YDRX2 |
| folder_name | 20220527_GAP_NGS_AGRF_CAGRF21088054_H7W7YDRX2 |
| genomic_material_preparation_date | 2022-04-29 |
| genomic_material_preparation_process | CTAB DNA extraction (McLay 2017; https://dx.doi.org/10.17504/protocols.io.i8jchun), mechanical DNA shearing (Schuster et al. 2018; https://doi.org/10.1371/journal.pone.0195034), Integrated DNA Technologies [IDT] xGen Stubby Adapter ligation, IDT Unique Dual index primer ligation. |
| genomic_material_preparation_type | gDNA; Illumina TruSeq-style NGS libraries |
| genomic_material_prepared_by | Harvey Orel | The University of Melbourne |
| herbarium_code | CNS |
| id_vetting_by | B. Hyland |
| id_vetting_date | 1975-03-24 |
| library_construction_protocol | Client Prepared Library Prep (Illumina TruSeq-style NGS libraries) with MyBaits Angiosperm353 Capture |
| library_id | 381915 |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Pre-Nagoya |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/377117 |
| sample_submission_date | 2022-05-05 |
| sample_submitter_email | horel@student.unimelb.edu.au |
| sample_submitter_name | Harvey Orel |
| scientific_name | Flindersia brassii |
| scientific_name_authorship | T.G.Hartley & B.Hyland |
| sequencer | NovaSeq 6000 |
| silica_gel | Yes |
| silica_gel_id | Costion, C. 1763 |
| ticket | BPAOPS-1269 |
| voucher_herbarium_catalog_number | QRS 53186.1 |
| voucher_herbarium_collector_id | Hyland, B. |
| voucher_herbarium_event_date | 1972-10-18 |
| voucher_herbarium_record_number | Costion, C. 1763 |