GAP Illumina short read, Phylogenomics, 377218, Angiosperms353 bait kit
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-06-02 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1271/20220530_GAP_NGS_AGRF_CAGRF21088055_H7GNHDRX2/ |
| ccg_jira_ticket | BPAOPS-1271 |
| data_type | Main dataset (AATOL Stage 2) |
| dataset_id | 83703 |
| date_data_published | 3/6/22 |
| date_of_transfer | 2022-06-02 |
| date_of_transfer_to_archive | 2022-06-02 |
| description | Illumina Short Read |
| dna_extract | Yes |
| dna_extract_pressed_sheet | Independent silica collection made at time of voucher collection |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1271 |
| facility | AGRF |
| family | Asphodelaceae |
| flow_cell_id | H7GNHDRX2 |
| folder_name | 20220530_GAP_NGS_AGRF_CAGRF21088055_H7GNHDRX2 |
| genomic_material_preparation_date | 2022-04-27 |
| genomic_material_preparation_process | CTAB DNA extraction, mechanical DNA shearing, custom adapter ligation, custom barcode ligation |
| genomic_material_preparation_type | gDNA, whole genome shotgun sequencing |
| genomic_material_prepared_by | Todd McLay | RBGV |
| herbarium_code | MELU |
| id_vetting_by | Todd McLay |
| id_vetting_date | 2012-10-18 |
| library_construction_protocol | Client Prepared Library Prep (Illumina TruSeq-style NGS libraries) with MyBaits Angiosperm353 Capture |
| library_id | 382016 |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | SW015071 |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/377218 |
| sample_submission_date | 2022-05-11 |
| sample_submitter_email | todd.mclay@rbg.vic.gov.au |
| sample_submitter_name | Todd McLay |
| scientific_name | Xanthorrhoea thorntonii |
| scientific_name_authorship | Tate |
| sequencer | NovaSeq 6000 |
| silica_gel_id | TM0111 |
| ticket | BPAOPS-1271 |
| voucher_herbarium_catalog_number | MELUM125753a |
| voucher_herbarium_collector_id | Todd McLay |
| voucher_herbarium_event_date | 2020-11-25 |
| voucher_herbarium_record_number | TM0111 |
| voucher_herbarium_recorded_by | Todd McLay |