GAP Illumina short read, Phylogenomics, 377243, Angiosperms353 bait kit
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-06-02 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1272/20220530_GAP_NGS_AGRF_CAGRF21088056_H7GNHDRX2/ |
| ccg_jira_ticket | BPAOPS-1272 |
| country | Australia |
| data_type | Main dataset (AATOL Stage 2) |
| dataset_id | 83704 |
| date_data_published | 3/6/22 |
| date_of_transfer | 2022-06-02 |
| date_of_transfer_to_archive | 2022-06-02 |
| decimal_latitude_public | -19.13005 |
| decimal_longitude_public | 145.33773 |
| description | Illumina Short Read |
| dna_extract | Yes |
| dna_extract_pressed_sheet | Silica sample from a cultivated plant from same location |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1272 |
| facility | AGRF |
| family | Araceae |
| flow_cell_id | H7GNHDRX2 |
| folder_name | 20220530_GAP_NGS_AGRF_CAGRF21088056_H7GNHDRX2 |
| genomic_material_preparation_date | 2022-04-27 |
| genomic_material_preparation_materials | Custom library preparation protocol, Custom adapters/barcodes |
| genomic_material_preparation_process | Mechanical DNA shearing, Custom adapter ligation, Custom barcode ligation |
| genomic_material_preparation_type | Illumina libraries |
| genomic_material_prepared_by | Todd McLay, Royal Botanic Gardens, Victoria |
| herbarium_code | CNS |
| latitude | -19.13005 |
| library_construction_protocol | Client Prepared Library Prep (Illumina TruSeq-style NGS libraries) with MyBaits Angiosperm353 Capture |
| library_id | 382041 |
| location_id | Cultivated Redlynch, from east of Greenvale |
| longitude | 145.33773 |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | WITK16101515 |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/377243 |
| sample_submission_date | 2022-05-11 |
| sample_submitter_email | matt.barrett@jcu.edu.au |
| sample_submitter_name | Matt Barrett |
| scientific_name | Typhonium aff. brownii |
| scientific_name_authorship | Schott |
| scientific_name_notes | Undescribed species (Barrett in prep.) |
| sequencer | NovaSeq 6000 |
| state_or_territory | Queensland |
| ticket | BPAOPS-1272 |
| voucher_herbarium_catalog_number | CNS 152282.1 |
| voucher_herbarium_collector_id | D.F. Baume |
| voucher_herbarium_event_date | 2019-12-07 |
| voucher_herbarium_record_number | 120 |