GAP Illumina short read, Phylogenomics, 377250, Angiosperms353 bait kit
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Additional Info Show Blank Fields
Field | Value |
---|---|
Resource Permissions | organization_member |
Access Control Date | 2023-06-02 |
Access Control Mode | date |
Sequence Data Type | illumina-shortread |
analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
bait_set_name | Angiosperms353 bait kit |
bait_set_reference | 10.1093/sysbio/syy086 |
base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1272/20220530_GAP_NGS_AGRF_CAGRF21088056_H7GNHDRX2/ |
ccg_jira_ticket | BPAOPS-1272 |
country | Australia |
data_type | Main dataset (AATOL Stage 2) |
dataset_id | 83704 |
date_data_published | 3/6/22 |
date_of_transfer | 2022-06-02 |
date_of_transfer_to_archive | 2022-06-02 |
decimal_latitude_public | -16.9 |
decimal_longitude_public | 145.6833 |
description | Illumina Short Read |
dna_extract | Yes |
dna_extract_pressed_sheet | Independent silica collection made at time of voucher collection |
download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1272 |
facility | AGRF |
family | Araceae |
flow_cell_id | H7GNHDRX2 |
folder_name | 20220530_GAP_NGS_AGRF_CAGRF21088056_H7GNHDRX2 |
genomic_material_preparation_date | 2022-04-27 |
genomic_material_preparation_materials | Custom library preparation protocol, Custom adapters/barcodes |
genomic_material_preparation_process | Mechanical DNA shearing, Custom adapter ligation, Custom barcode ligation |
genomic_material_preparation_type | Illumina libraries |
genomic_material_prepared_by | Todd McLay, Royal Botanic Gardens, Victoria |
herbarium_code | CNS |
latitude | -16.9 |
library_construction_protocol | Client Prepared Library Prep (Illumina TruSeq-style NGS libraries) with MyBaits Angiosperm353 Capture |
library_id | 382048 |
location_id | CULTIVATED: Redlynch ex Lakefield NP |
longitude | 145.6833 |
metadata_revision_date | 2023-09-14 |
metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
nagoya_protocol_compliance | Yes |
nagoya_protocol_permit_number | WITK16101515 |
project_aim | Phylogenomics |
run_format | 150PE |
sample_id | 102.100.100/377250 |
sample_submission_date | 2022-05-11 |
sample_submitter_email | matt.barrett@jcu.edu.au |
sample_submitter_name | Matt Barrett |
scientific_name | Typhonium aff. jonesii |
scientific_name_authorship | A.Hay |
scientific_name_notes | Undescribed species (Barrett in prep.) |
sequencer | NovaSeq 6000 |
state_or_territory | Queensland |
ticket | BPAOPS-1272 |
voucher_herbarium_catalog_number | CNS 147710.1 |
voucher_herbarium_collector_id | Baume, D.F. |
voucher_herbarium_event_date | 2017-02-01 |
voucher_herbarium_record_number | 90 |