GAP Illumina short read, Phylogenomics, 377774, Angiosperms353 bait kit
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member |
| Access Control Date | 2023-04-19 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1224/20220415_GAP_NGS_AGRF_CAGRF21098130_HJTNGDSX3/ |
| ccg_jira_ticket | BPAOPS-1224 |
| country | Australia |
| data_type | Main dataset (AATOL Stage 2) |
| dataset_id | 83696 |
| date_data_published | 27/4/22 |
| date_of_transfer | 2022-04-19 |
| date_of_transfer_to_archive | 2022-04-23 |
| decimal_latitude_public | -15.80739082 |
| decimal_longitude_public | 125.4041831 |
| description | Illumina Short Read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1224 |
| facility | AGRF |
| family | Stylidiaceae |
| flow_cell_id | HJTNGDSX3 |
| folder_name | 20220415_GAP_NGS_AGRF_CAGRF21098130_HJTNGDSX3 |
| genomic_material_prepared_by | AGRF (Jan 2022) |
| herbarium_code | PERTH |
| id_vetting_by | J.A. Wege |
| id_vetting_date | 2020-07-30 |
| latitude | -15.80739082 |
| library_construction_protocol | NEBNext Ultra II FS DNA Library Prep with MyBaits Angiosperm 353 Capture |
| library_id | 382572 |
| longitude | 125.4041831 |
| metadata_revision_date | 2023-09-14 |
| metadata_revision_filename | 2023-09-07_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Pre-Nagoya |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/377774 |
| sample_submission_date | 2022-01-12 |
| sample_submitter_email | Juliet.Wege@dbca.wa.gov.au |
| sample_submitter_name | Juliet Wege |
| scientific_name | Stylidium irriguum |
| scientific_name_authorship | W.Fitzg. |
| scientific_name_notes | APC accepted name at time of sample submission is Stylidium rotundifolium R.Br. but WA accepts Stylidium irriguum W.Fitzg., see Parker, C.M. (10 March 2015), Updates to Western Australia's vascular plant census for 2014. Nuytsia 25: 23. This species will be accepted in Wege’s forthcoming Flora of Australia account. |
| sequencer | NovaSeq 6000 |
| silica_gel | No |
| silica_gel_id | N/A |
| silica_gel_pressed_sheet | Derived from pressed sheet |
| ticket | BPAOPS-1224 |
| voucher_herbarium_catalog_number | PERTH 7306059 |
| voucher_herbarium_collector_id | C. Bugden |
| voucher_herbarium_event_date | 2005-07-12 |
| voucher_herbarium_record_number | CDT 27 |