GAP Illumina short read, Phylogenomics, 377939, Angiosperms353 bait kit
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
for attribution information.
Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:gap-consortium-members |
| Access Control Date | 2023-03-21 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.7.5 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.609.3.9.3 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1212/20220318_GAP_AGRF_CAGRF21098125_HJNKJDSX3/ |
| ccg_jira_ticket | BPAOPS-1212 |
| country | Australia |
| data_type | Main dataset (AATOL Stage 2) |
| dataset_id | 83697 |
| date_data_published | 23/3/22 |
| date_of_transfer | 2022-03-21 |
| date_of_transfer_to_archive | 2022-03-21 |
| decimal_latitude_public | -29.5575 |
| decimal_longitude_public | 152.225278 |
| description | Illumina Short Read |
| download | https://data.bioplatforms.com/dataset?ext_search_by=&q=ticket%3ABPAOPS-1212 |
| facility | AGRF |
| family | Lamiaceae |
| flow_cell_id | HJNKJDSX3 |
| folder_name | 20220318_GAP_AGRF_CAGRF21098125_HJNKJDSX3 |
| genomic_material_prepared_by | AGRF (Dec 2021) |
| herbarium_code | NSW |
| id_vetting_by | Wilson T.C. |
| id_vetting_date | 2020-08-01 |
| latitude | -29.5575 |
| library_construction_protocol | NEBNext Ultra II FS DNA Library Prep with MyBaits Angiosperm 353 Capture |
| library_id | 382737 |
| longitude | 152.225278 |
| metadata_revision_date | 2025-10-14 |
| metadata_revision_filename | 2025-10-15_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | Scientific Licence SL 100569 issued under Part 2 of the BIODIVERSITY CONSERVATION ACT 2018 |
| project_aim | Phylogenomics |
| run_format | 150PE |
| sample_id | 102.100.100/377939 |
| sample_submission_date | 2021-12-01 |
| sample_submitter_email | Trevor.C.Wilson@rbgsyd.nsw.gov.au |
| sample_submitter_name | Trevor Wilson |
| scientific_name | Teucrium corymbosum |
| scientific_name_authorship | R.Br. |
| sequencer | NovaSeq 6000 |
| silica_gel_pressed_sheet | Yes |
| state_or_territory | NSW |
| ticket | BPAOPS-1212 |
| voucher_herbarium_catalog_number | NSW1099946 |
| voucher_herbarium_collector_id | Wilson T.C. |
| voucher_herbarium_event_date | 2020-08-01 |
| voucher_herbarium_record_number | 890 |