GAP Illumina short read, Conservation genomics - bait capture, 344724, Angiosperms353 bait kit
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Data and Resources
This data is made available openly under a Creative Commons Attribution license.
Please see the initiative
Data Policy
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Additional Info Show Blank Fields
| Field | Value |
|---|---|
| Resource Permissions | organization_member_after_embargo:date_of_transfer_to_archive:365:gap-consortium-members |
| Access Control Date | 2024-06-08 |
| Access Control Mode | date |
| Sequence Data Type | illumina-shortread |
| analysissoftwareversion | NovaSeq Control Software (NCS) v1.8.1 and Real Time Analysis (RTA) v3.4.4, DRAGEN BCL Convert 07.021.645.4.0.3 |
| bait_set_name | Angiosperms353 bait kit |
| bait_set_reference | 10.1093/sysbio/syy086 |
| base_url | https://downloads-qcif.bioplatforms.com/bpa/plants_staging/genomics-illumina-shortread/BPAOPS-1413/20230608_GAP_NGS_AGRF_CAGRF230313904_HFFG2DSX7/ |
| ccg_jira_ticket | BPAOPS-1413 |
| country | Australia |
| data_type | Main dataset |
| dataset_id | 83810 |
| date_data_published | 14/06/2023 |
| date_of_transfer | 2023-06-09 |
| date_of_transfer_to_archive | 2023-06-12 |
| description | Illumina Short Read |
| dna_extract | Yes |
| dna_extract_pressed_sheet | Not applicable |
| download | https://data.bioplatforms.com/dataset/?ext_search_by=&q=ticket%3ABPAOPS-1413 |
| facility | AGRF |
| family | Proteaceae |
| flow_cell_id | HFFG2DSX7 |
| folder_name | 20230608_GAP_NGS_AGRF_CAGRF230313904_HFFG2DSX7 |
| genomic_material_preparation_date | 2021-01-01 |
| genomic_material_preparation_process | CTAB |
| genomic_material_preparation_type | gDNA |
| genomic_material_prepared_by | Bronwyn Macdonald |
| id_vetting_by | Rob Davis, Mike Hislop, Barbara Rye |
| id_vetting_date | 2020-11-01 |
| library_construction_protocol | NEBNext Ultra II FS DNA Library Prep with MyBaits Angiosperm 353 Capture |
| library_id | 383539 |
| living_collections_catalog_number | SPA3-04 |
| living_collections_event_date | 2020-10-01 |
| living_collections_record_number | RD 13916 |
| living_collections_recorded_by | Rob Davis |
| location_id | Salt River Road |
| metadata_revision_date | 2025-10-14 |
| metadata_revision_filename | 2025-10-15_Combined_plant_sample_metadata_forQCIF.xlsx |
| nagoya_protocol_compliance | Yes |
| nagoya_protocol_permit_number | FT61000130 |
| population_group | SPA3 |
| preservation_date_begin | 2020-11-01 |
| preservation_temperature | Room Temp | -4°C |
| preservation_type | Silica (leaf) | Freezing (DNA) |
| project_aim | Conservation genomics - bait capture |
| run_format | 150PE |
| sample_id | 102.100.100/344724 |
| sample_submission_date | 2021-02-18 |
| sample_submitter_email | rachel.binks@dbca.wa.gov.au |
| sample_submitter_name | Rachel Binks |
| scientific_name | Isopogon spathulatus |
| scientific_name_authorship | R.Br. |
| sequencer | NovaSeq 6000 |
| silica_gel | Yes |
| silica_gel_id | Not applicable |
| silica_gel_pressed_sheet | No |
| species_complex | Isopogon buxifolius species complex |
| state_or_territory | Western Australia |
| ticket | BPAOPS-1413 |